BtaINT0009046 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45565391-45565704:-
Coord C1 exon
chr7:45565644-45565704
Coord A exon
chr7:45565500-45565643
Coord C2 exon
chr7:45565391-45565499
Length
144 bp
Sequences
Splice sites
5' ss Seq
CCCGTATGT
5' ss Score
5.55
3' ss Seq
GCACCCATCTCTGTCCCCAGGAC
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTTTCCAAGGGAAGAGCTGTGCTGGGGGGACACCCATGAGTACCGCCTCTGCCAGCAGCCC
Seq A exon
GTATGTTCTACCCCACCCATCTCTTAAACTCAGTTCTCCCAGAAGCCCTCCTGCTTCCCTGCTCAAGCCCCCAAATATGCTTAGCACCATACCAGGTGCTCTTGGGGCTGTCCCAGCCTCTGCTGCACCCATCTCTGTCCCCAG
Seq C2 exon
GACTGTCCTCCAGGGGCCATGCCCTTTCGAGACCTCCAATGTGCCCTCTACAATGGCCACCCTGTCCTAGGCACCCAGAAGACCTACCAGTGGGTGCCCTTCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263:ENSBTAT00000065686:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
NA
C2:
PF0009014=TSP_1=PD(2.1=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAAGGGAAGAGCTGTGC
R:
ACCCACTGGTAGGTCTTCTGG
Band lengths:
155-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]