MmuINT0011591 @ mm10
Intron Retention
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80344833-80345103:-
Coord C1 exon
chr10:80345043-80345103
Coord A exon
chr10:80344942-80345042
Coord C2 exon
chr10:80344833-80344941
Length
101 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
3' ss Seq
CCACCTATATCTTCGCCCAGGAC
3' ss Score
5.88
Exon sequences
Seq C1 exon
ACTTCCCGGAGAGGAACTTTGTTGGGGCGACAGCCATGAATACCGGGTGTGCCAGCTGCCG
Seq A exon
GTAGGCCCTCGCATCTGCCCTGTATCCCTCTTACTTGGTTCTGCCCACCTCAAATACCCCTTGTTGGTTTGCCCGGTTTATCCACCTATATCTTCGCCCAG
Seq C2 exon
GACTGCCCTCCAGGGACCACACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCTGTCCTGGACACCCAGAAAACCTACCAGTGGGTGCCCTTCCACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822:ENSMUST00000105352:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
NA
C2:
PF0009014=TSP_1=PD(2.1=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGAGGAACTTTGTTGGG
R:
GGCACCCACTGGTAGGTTTTC
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types