GgaINT0145653 @ galGal4
Intron Retention
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3131188-3131464:-
Coord C1 exon
chr28:3131404-3131464
Coord A exon
chr28:3131297-3131403
Coord C2 exon
chr28:3131188-3131296
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCATCGTGCTGTCCCCACAGGGC
3' ss Score
11.51
Exon sequences
Seq C1 exon
CTCTGCCGAGGAGGAGCCGTGCATAGGAGACCAGCGGCAGTACCGGCTCTGCCAGCTCCAG
Seq A exon
GTGAGCATCCATGGTGCAGCACAGCACAGCACAGCACAGCACAGCACAGCACGGCCCCATGGGTTCCACATTCCAGGCCCTATTGCCCCATCGTGCTGTCCCCACAG
Seq C2 exon
GGCTGCCCTGGCGGCTCAGTGCCGTTCCGTGCCATGCAGTGCTCCCTATACGACGACACACCCGTGCAGGGCATGCAGACCCGGCACCGCTGGGTGCCCTTCTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298:ENSGALT00000041053:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
NA
C2:
PF0009014=TSP_1=PD(2.1=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCGAGGAGGAGCC
R:
GGGTGTGTCGTCGTATAGGGA
Band lengths:
124-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]