BtaINT0009090 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MX70]
Coordinates
chr5:100927370-100929149:-
Coord C1 exon
chr5:100929043-100929149
Coord A exon
chr5:100927495-100929042
Coord C2 exon
chr5:100927370-100927494
Length
1548 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
ATTTTTGTGTTTGGTTTTAGATT
3' ss Score
10.78
Exon sequences
Seq C1 exon
AACTTTCTGACAAGATACAAAGACATTTTTGACTATTGGATTGGCCTTAGCAGAGAATCATCACATCATGCTTGGAAGTGGACAGACAACTCTAAACTTAATGTCCC
Seq A exon
GTAAGTTTTTAGGCTGCCTTCTATTCTATGTAGTTATGGGTGTGAGTTGTATTTATGGGAATGTAAATTTCATATCATGGAAAGTTTCCTGCACTATGATGTAAGAAATAGAAGTCCTTTGTATGCTCTTCTGTTTATTAGCAGTGCCTTTGGGAAAAGTTTACATATCATGTTTTCAATTGAAGTCTTTAGCATGATGATGACATTAGACATAGTTCTTCTGCTTTCACGCACTGACTTAAACTGTGCTGAAATCCATATTTAGAATGTAGAGAGAGCAGCTGAGGTACTCTGGGGTCCTATAGTCTTGGAAAGCCACTGAAGAATTGGTATCCACAGACCCTCAGTCCACTCTGCCAGCTGCTGTGTTATTCCTAAAAGGTATGTTGTCAGGGACCCAGAGGGAATCCCTCCTGTGATAATTTATCCCTGGAAGAAACTTAGTATCTGAACACTTCAGTGGAGAGGTCTTAACTGTAACCATTACACTGGAGCAGACAGAATAAAAAGGGGCAATAGCTTCCCTCAATCAAAGCCAAGCCCATTTAAGAATTTACTAGTAAGTACATAATTTTATTTTCATATGTTTATGAAGCAGGTCAAGAGAACACTGAAAATCATCTTCATTGAAGGCCAATGAAAATAATTAATAAATGATCAAAACTAAAAGAATAGAGAAGAGTTTTATTTGAGCCAAGCTGAGGACTAGCCTGGAAGCCCACCTCCCAGATCACTCTGAGAAACTGCTTCAGAGAAACAGGGTTTCTAGCCCAGTTTTATATTTTGTCAGAAGAGAGAACATTAAACAAGTCAGGGTCACATTCCTTCAAGATTTCAAGGATATTTCTTTTTTTAAAAAATATAAATTTATTTATTTTAATTGGAGGTTAATTACTTTACAGTATTGTACTGGTTTTGCCATACATCAACATGAATCCAAATGAAAAAAATAGACCAGCACATACAGAGCGGGTCAGTATGGCCTTGGCACCTGGGAAGGGAGTCTTATCATTGAAGGAGGACCAGCACTAGTGTCCCCAGAAGAGAGACATTTAATTTTTATTTTTAACATGGACATTTTTTATTTCTGGTCAGTGTACCCTTTTCTTTCGTCATTAAAGCAAAAGTAGAATATATGTTTGATAGGCCACAAACAGGCTGTTACAGATGGCCTAAAATTCAAGTTTACTCATGTGTAAGCCAGAATGACTTCCCTATCTTTCAATATATGCAAATGTCTTTTATCTCCACCCATGGCAGCAGTTCACCTGGCTGCAACAGCAAGCGCTAAATAACTAGTCAACAACATAACTGGATTTGGGATGGGTGATGATAATCTGATATTCAGGTAGGGAGTATGAGAGTATATAAGGAACTAAATACAAAAATGATGTATATATATTATACTAAGAAGCCATATGAAGACAGATTTTCACTTTTCTCTGGTTCACATTAAAAATACCTGGAGTGGGGGTGTGGAAGAATATGAGGAGGAAAGAATGCAGATGTCCAACCTGTGCTTTTTAATATTTTTGTGTTTGGTTTTAG
Seq C2 exon
ATTTGTCATCCAAGGAACTGGAGAATGTGCCTACCTGACTGACTCTGGAGTTAGTAGTGGCAAGAGATACGTAATTAGAAAAAGGATTTGCAGCAAGACAAATAGTAATGTCTCCATATCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046324:ENSBTAT00000063840:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.7=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.6=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTCTGACAAGATACAAAGACAT
R:
GGAGACATTACTATTTGTCTTGCTGC
Band lengths:
222-1770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]