HsaINT0094197 @ hg38
Intron Retention
Gene
ENSG00000272917 | RP11-705C15.5
Description
NA
Coordinates
chr12:9655873-9657070:+
Coord C1 exon
chr12:9655873-9655979
Coord A exon
chr12:9655980-9656920
Coord C2 exon
chr12:9656921-9657070
Length
941 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
ATTTTTGTGTTTGGATTTAGGCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCATCCCATCGCATTTGGAAATGGACAGACAACATGGAATATAATAACAT
Seq A exon
GTATGTTTTGAGACTTCTCATCTTTTGCTGTGTTTATGTATGGTTATGTGTGTGAGTTGTGTTTATGAGATAAGAAATGTAGTATCATGGAAAACTTACTGCAATATGAGGTAAGAAATCTAAACCCTTTTTATGCTCTTCAGTTGGTTAGCTGTGTCTTTGGGAAAGCTTTACCTGTGATTTCAGTTGAAGTCTTTAATGTGACAGTGACATTTCTCACAATTTTACACTTTCATCCACTGATTTAAAACTGCTGAAATCCCTACTTATAGCTGATGTGCAACAAAGGTTCTACAATCATAGGAAGCCACTGAGGAGCTGATATCCACAAGGCTGTTAAGCCCACTCTTGCAGGTGTTGCATCCATTTACAATAGGAAAGCATCCAGGGAACTCATGGGAATCTCTCCCTCCTAAAGCTTTATCACCAGAAGGAAACTAGTAACAGTTCCTTGGACTGTGAACATTTCAAAGGGGTATTTTGAATATAATCATTACATTGCAGCAGATAAAATGTAGGAACCCAGTCATATCCATTAATCAAAGCTAAGCCCTTTCAGGAATTTACTAGTTTTTTTTTTTTTTTTAGTTTTCACACATTTACAAAACAATTTGGGAGGAGGCTGGAAATCATCTTGACTGAAGACCACCAATGGCAGCAGTTCATTTGGGTACAGCAGCAAGCATCAGTTAAATACCTATCAACATAGCTGGGCTTGGTATGGATGAATGATAAGCTTGTGATTTTCAAGCAAGGACCTTGAGGACATAAAGGACACTAAATACAGAAATGGTTTATATTACTATGAAGCAATATTAATGACAGACTTTTGCTTTTCTCTTATTCACATTGAAATATGGAGGGGTTGCAGAAGATGATGGGGAGGAACAAATGCAGGTGTCTAACTTACAAATATTTAATATTTTTGTGTTTGGATTTAG
Seq C2 exon
GCTTGCTATCAGAGGAAGTGGAGAATGTGCCTTCCTGAATGACAATGGAGTCAACAGTGGCAGAATCTACATGAACAGAAAATGGATTTGTAGCAAGCCAAACAATTATGTCTACAGTTGCCAGTTATGTCCCCACTGGGATACTACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272917:ENST00000573622:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCTGAAAAGATACAAAGGCCC
R:
CCAGTGGGGACATAACTGGCA
Band lengths:
246-1187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains