HsaALTD1049548-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000272917 | RP11-705C15.5
Description
NA
Coordinates
chr12:9656568-9657070:+
Coord C1 exon
chr12:9656568-9656649
Coord A exon
chr12:9656650-9656697
Coord C2 exon
chr12:9656921-9657070
Length
48 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
ATTTTTGTGTTTGGATTTAGGCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
TTTTCACACATTTACAAAACAATTTGGGAGGAGGCTGGAAATCATCTTGACTGAAGACCACCAATGGCAGCAGTTCATTTGG
Seq A exon
GTACAGCAGCAAGCATCAGTTAAATACCTATCAACATAGCTGGGCTTG
Seq C2 exon
GCTTGCTATCAGAGGAAGTGGAGAATGTGCCTTCCTGAATGACAATGGAGTCAACAGTGGCAGAATCTACATGAACAGAAAATGGATTTGTAGCAAGCCAAACAATTATGTCTACAGTTGCCAGTTATGTCCCCACTGGGATACTACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272917-22-8,23-8,24-8-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATTTGGGAGGAGGCTGG
R:
GATTCTGCCACTGTTGACTCCA
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains