BtaINT0009315 @ bosTau6
Intron Retention
Description
Mast cell protease-11-like; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXR7]
Coordinates
chr25:1006912-1007350:-
Coord C1 exon
chr25:1007196-1007350
Coord A exon
chr25:1007083-1007195
Coord C2 exon
chr25:1006912-1007082
Length
113 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TGAGTGGTGTTTTCCCACAGGGT
3' ss Score
9.95
Exon sequences
Seq C1 exon
CGCCCCTGCCCCCTCCCTACCACCTGCAGGAGGTGGAGGTGCCCATCGTGGGGAACCAGGTTTGTAACCAACACTATCAGAAACTTGAAAACAGCACCAAGCCAATCAAGGATGACATGCTGTGTGCCGGGAGCAAGGGCCAGGATTCCTGCAAG
Seq A exon
GTGGGATCCCGGACTCACCCTCTAATCTGTCCCCCCAACCCCTGAGCAGGGGACCCGCCAGCCCCACTGCCTAGGGACATGGGAAGTGCTTACTGAGTGGTGTTTTCCCACAG
Seq C2 exon
GGTGACTCCGGGGGGGCCCTGGTGTGCCTCTGGAAATGCTCCTGGGTCCAGGTGGGAGTTGTCAGCTGGGGCCACAAGTGTGCGCTCCCCGACTTCCCTGGGGTATACACCCGGGTGACCAGCTACATGTCCTGGATCCGCCAGTATGTCCCACTGTCCCCAGGGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046722:ENSBTAT00000066317:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTACCACCTGCAGGAG
R:
TGTATACCCCAGGGAAGTCGG
Band lengths:
252-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]