MmuINT0127445 @ mm9
Intron Retention
Gene
ENSMUSG00000034039 | Prss29
Description
protease, serine, 29 [Source:MGI Symbol;Acc:MGI:2149952]
Coordinates
chr17:25459037-25459629:+
Coord C1 exon
chr17:25459037-25459203
Coord A exon
chr17:25459204-25459287
Coord C2 exon
chr17:25459288-25459629
Length
84 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
AGAGCTTCTTTCTCTTCTAGGGT
3' ss Score
9.78
Exon sequences
Seq C1 exon
GGTCGCTGCCTCCTCCCTACCGCCTACAGCAGGTGCAGGTAAAGATAATTGACAACTCACTTTGTGAGGAGATGTACCACAATGCCACCAGGCACCGCAATCGTGGCCAGAAACTGATCCTAAAGGACATGTTATGTGCAGGCAACCAGGGCCAAGATTCCTGCTAT
Seq A exon
GTGAGTTCCACTCACCTCCTCCTCTTGGTTGGTCTTCATTCCCATGTCAGGGCTAGTAACTATCAGAGCTTCTTTCTCTTCTAG
Seq C2 exon
GGTGACTCAGGTGGCCCTCTGGTCTGCAATGTGACAGGCTCCTGGACCCTGGTGGGAGTGGTGAGCTGGGGCTATGGCTGTGCCCTCAGGGACTTCCCTGGGGTCTATGCACGTGTACAGTCCTTCCTGCCCTGGATCACGCAGCAGATGCAGAGGTTCTCCTGAGCCCAGCTGCTGGCCTCGTGGCCATCAGATGAGGATAGGTCGGCTTTGGTCACGATTCCAGAGTGGACGGCCAGGGTTTAGGCTCTGGAGTGTAGGTGACCAGGGCACCGAGCATTAGCTACTGAAGGACATGGCTCAGTTTCCTGGCTTCCTAAATAAAGATATGTTTGTTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034039-Prss29:NM_053260:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.7=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATGTGCAGGCAACCAGG
R:
CAGGAAGGACTGTACACGTGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: