BtaINT0009565 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYD2]
Coordinates
chr23:27084561-27084944:+
Coord C1 exon
chr23:27084561-27084760
Coord A exon
chr23:27084761-27084840
Coord C2 exon
chr23:27084841-27084944
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
AACTTAACCCTAACCCTCAGCAT
3' ss Score
3.34
Exon sequences
Seq C1 exon
GATTGGGGCTCCATTTCCCAGATTCAGCGCCGCCTTCAGGAGGAGTTGGATCGCGAGCTGGGCCCCGGAGCCTCATGCTCCCGAGTCACTTACAAGGACCGCGCTCGGCTGCCTCTGCTCAACGCCACCATCGCGGAGGTGCTGCGCCTGCGGCCGGTCGTGCCCCTGGCCTTGCCTCACCGCACCACGCGGCCTAGCAG
Seq A exon
GTGACTTCGGAGGCCTAGGGATGAACGGCCAAGGCCCCAGCGGGGCCTCGGCGGGCCTCTAACTTAACCCTAACCCTCAG
Seq C2 exon
CATCTTCGGCTACGACATCCCTGAGGGCATGGTCGTTATCCCCAACCTCCAAGGTGCCCACCTGGACGAGACCGTCTGGGAGCAGCCGCACGAGTTCCGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047039:ENSBTAT00000063123:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(35.7=91.0)
A:
NA
C2:
PF0006717=p450=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCACTTACAAGGACCGCG
R:
GGAGGTTGGGGATAACGACCA
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]