GgaINT1010890 @ galGal4
Intron Retention
Gene
ENSGALG00000010153 | CYP21A2
Description
steroid 21-hydroxylase precursor [Source:RefSeq peptide;Acc:NP_001092828]
Coordinates
chr16:38258-38853:-
Coord C1 exon
chr16:38684-38853
Coord A exon
chr16:38362-38683
Coord C2 exon
chr16:38258-38361
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
AGCATTCTGTCCCTTCCCAGCAT
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTGCAGGACCAGGTACGTGCAGAGCTGCGCCAGGTGCTGGGCCCCAGGGGGACCCCAAAGCCAGGGGATATGGGGCGACTGCCACTGCTCCGTGCCACTGTCACCGAGACCCTCCGCCTGCGACCCCCTGCGCCCCTCGCGCTGCCCCACTGTGCCCGGCGCCACTCCAG
Seq A exon
GTACAGCCAGTAACACCAGTACGGACCGGTATGGGGCCAAACAGACCAGTGGGGATCAGTACCAACCAGTGCGGGCCACATGTCTGCGAGCAGAACCGTGCACCACTGCGTGTCAGTATTTTGCACTAGAATGAATCATTGTAGACCAGTCTGTAATAGTGTGGACCACTACAGACCAGCATGGACCTAGCAGTAGGTCGGTCCCAGTAGAACTCATCAAGCACCCAGTAAGCTCTAGGATAGCTCAGCAGGTCCCACTATGTCCCACTTGGCCTCTGTAGGCTCTCCCAGTCCATCCTATCAGCATTCTGTCCCTTCCCAG
Seq C2 exon
CATTGCGGGAATCCCAGTGCCTGCGGGATCCATCGTTATCCCAAACCTCTTTGCTGCGCACCACGACCCCAAGATTTGGGACCGTCCTGATGAGTTCCTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010153:ENSGALT00000016503:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCAGGTACGTGCAGAG
R:
CGGGCAGGAACTCATCAGGA
Band lengths:
270-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]