BtaINT0010141 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50423613-50424483:-
Coord C1 exon
chr18:50424289-50424483
Coord A exon
chr18:50423776-50424288
Coord C2 exon
chr18:50423613-50423775
Length
513 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCA
5' ss Score
7.22
3' ss Seq
CTCCCACTCATCTCTATCAGATC
3' ss Score
8.86
Exon sequences
Seq C1 exon
CTCCCAGTTGCCACCATGCTGGCCTCAGGGCTGCTCCTCGTGGCTTTGCTGGCCTGTCTGACTATCATGGTCTTGATGTCTGTCTGGCGGCAAAGGAACCTCAAAGGGAAATTGCCTCCAGGGCCCACTCCTCTGCCCTTCATCGGGAACTACCTGCAGCTGAACACCGAGCAGATGTGCAACTCCCTCATGAAG
Seq A exon
GTATCATGGGGCAGAGATGGGTGGAATGGGATGAAGGGGGGCGGCCTGTCCAGTTCGTCTGCGGCTTTATGGCAGGGGGTGGGCAATGTTGGGCAAGAGTCTTAGGAAAGAAGAAGGGAATTTTAAAGATCCAATACCAGGGTCCTGGGGCTTCCCTGGTGGCCCGAAGATAAAGAACCCATCTGCCAATACAGGAGACCCGGGTTTGATCCCTGCACTGGGAAGATGCCCCAGAGAAGGGAATAGCAACCCACTCCAGTATTCTTGCATGGGAAATCCCATGGACATAGAAGCCTGGCAGGCTACAGTCCATAGGGTCACAAAGAGACAGACATGACTGAGCAACTCAACAACAACAATTGGGGTCCTAGCCAGGAAAGACACCTTGAGATGTCCAGCTCCTTGATAGTCAGAACTTGTGAGGAAATGCATCCCAGTATGTGAGGTCTGGGTGCAGGGCCAGTTCAGAATAGGGGCTACTCCCACTAACTAACTCCCACTCATCTCTATCAG
Seq C2 exon
ATCAGCGAGCACTACGGCCCTGTGTTCACGGTCCACCTGGGGACCCGGCAGATTGTGGTGCTGTGTGGCTATGATGCTGTGAAGGAGGCTCTGGTGGACCAGGCTGAAGAATTCAGTGGGCGAGGCAAGCAGGCTACCTTTGACTGGCTCTTCAAAGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815:ENSBTAT00000065779:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(6.4=43.3)
A:
NA
C2:
PF0006717=p450=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGTTGCCACCATGC
R:
AGAGCCAGTCAAAGGTAGCCT
Band lengths:
346-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development