BtaINT0010143 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50421973-50422516:-
Coord C1 exon
chr18:50422367-50422516
Coord A exon
chr18:50422134-50422366
Coord C2 exon
chr18:50421973-50422133
Length
233 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CTCCGCTCTCATCCCCCCAGGCG
3' ss Score
11.25
Exon sequences
Seq C1 exon
GCGTGGCGTTCAGCAACGGGGAGCGCGCCAAGCAGCTCCGGCGCTTCTCGATTACAACTCTGCGGGACTTCGGCGTGGGCAAGCGCGGCATCGAAGAGCGCATCCAGGAGGAGGCGGGCTTCCTCATCGAGGCCTTCCGGGGCACTCGCG
Seq A exon
GTGAGCCTGGGGGACCCTGGAGTGTGCGAGGAGGAGGGAAACACCCGACGCGGCCACAGCGTTCTGGCCCGGGAAGGAGGGGCCACGCTGGGGGAAGGGTTTAGGGTCCGGCGCTGGAAGTTTAGTTCAGCACTGCCGTGCCCTCCTGCACTTCTCAGACCGCATCAGACCGCGAGCTGCCTCTCCGCTAAATCCCTGTCTCTCCCCAACCCCCTCCGCTCTCATCCCCCCAG
Seq C2 exon
GCGCCTTCATCGATCCCACCTTCTTCCTGAGCCGAACGGTCTCCAATGTCATCAGCTCCATTGTCTTCGGGGACCGCTTTGACTACGAGGACAAAGAGTTCTTGTCACTACTGCGAATGATGCTGGGAAGCTTCCAGTTCACCGCTACGTCTACCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815:ENSBTAT00000065779:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCAACGGGGAGCG
R:
GACGTAGCGGTGAACTGGAAG
Band lengths:
294-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development