GgaINT0036003 @ galGal3
Intron Retention
Gene
ENSGALG00000011394 | F1NT96_CHICK
Description
NA
Coordinates
chr8:27460210-27460755:-
Coord C1 exon
chr8:27460606-27460755
Coord A exon
chr8:27460371-27460605
Coord C2 exon
chr8:27460210-27460370
Length
235 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GTTTGCTTTTCCTTCTCCAGGAA
3' ss Score
11.96
Exon sequences
Seq C1 exon
GGCTGATCTCTTCCAGTGGGCACCTGTGGAAGCAGCAGAGAAGGTTCACTTTGACCACCCTTCGAAACTTTGGCCTGGGGAAGAGGAGCCTGGAGGAGCGGATACAGGAGGAGTGCCGATTCCTCACGGAAGCGTTCAGGGATGAGCAGG
Seq A exon
GTGAGGACCACTTCCCTCAGCAGTTGTGCTGAAGGCAGCATCCAGCTTGGACTGTTTTCTTTCCACCATGCTAGTGCCTGCTGAAAAATACCTCATCTCACAGGAAATGCTAGCAAAATGCCCACTGTGTGTCATTCATTTCACTTGTTGAATATTTTCCCACCAATGAAGGTGCTTTCTTCTCCTTTTCTGTGGACATGGGTAGAAAATTGATTGTTTGCTTTTCCTTCTCCAG
Seq C2 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACATCATCTGCTCCGTCACCTTTGGCAACCGGTTTGAATACCATGATGAGAACTTCCAAACCTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGAGAAAATAATGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394:ENSGALT00000017746:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCTCTTCCAGTGGGCAC
R:
TCTCATGGAGGGTAACAGTCTCA
Band lengths:
295-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]