HsaINT0044313 @ hg19
Intron Retention
Gene
ENSG00000134716 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:2634]
Coordinates
chr1:60377280-60377983:-
Coord C1 exon
chr1:60377834-60377983
Coord A exon
chr1:60377441-60377833
Coord C2 exon
chr1:60377280-60377440
Length
393 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TGCCCTTCCTCCACCTTCAGGAC
3' ss Score
12.1
Exon sequences
Seq C1 exon
GATTGATTATGTCAAGTGGCCAGGCATGGAAGGAGCAAAGAAGGTTCACTCTGACAGCACTAAGGAACTTTGGTTTAGGAAAGAAGAGCTTAGAGGAACGCATTCAGGAGGAGGCCCAACACCTCACTGAAGCAATAAAAGAGGAGAACG
Seq A exon
GTGAGCATTGCATATGACAGAGGTGAGAGACTGTGGCCCATTTGTTCATTGGACAGATACTTACTAAGTGAGTAAGTGCTTGTTCTATGCCCAGCACTGTGCTAGGAATGGAAGATAGAACAGTGAACAACTCTGTCCTCAAAGAGTTTTAGAAGTAAATACACAAAGATGGGCACTAAACACATTACTGAATTTAAGCCCTGGTCCGCAGTTTGACTTCCCTGGAGTTGACTGAATACTTGTTGTATGTCAGATGCAGTGTAAGGTCATGTGGCCAGCTCCTCATATATGGTTCTGCACTAGGTATGTCTTATGCCATGTAAAGTAGACTCTCAGTAGGAAATGGAGACAAATCCATCAGAAGGATCCATCTTGCCCTTCCTCCACCTTCAG
Seq C2 exon
GACAGCCTTTTGACCCTCATTTCAAGATCAACAATGCAGTTTCCAATATCATTTGCTCCATCACCTTCGGAGAACGCTTTGAGTACCAGGATAGTTGGTTTCAGCAGCTGCTGAAGTTACTAGATGAAGTCACATACTTGGAGGCTTCAAAGACATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134716-CYP2J2:NM_000775:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTCAAGTGGCCAGGCATG
R:
GGCATGTCTTTGAAGCCTCCA
Band lengths:
302-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)