RnoINT0044403 @ rn6
Intron Retention
Gene
ENSRNOG00000031004 | Cyp2j4
Description
cytochrome P450, family 2, subfamily j, polypeptide 4 [Source:RGD Symbol;Acc:620007]
Coordinates
chr5:119561574-119562285:-
Coord C1 exon
chr5:119562136-119562285
Coord A exon
chr5:119561735-119562135
Coord C2 exon
chr5:119561574-119561734
Length
401 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCCCTCTCCCCGTATCCAGGAA
3' ss Score
10.81
Exon sequences
Seq C1 exon
GATTGATCTTCTCCAGTGGTCAGACATGGAAGGAGCAAAGAAGGTTTGCCCTGATGACACTCAGGAATTTTGGCTTGGGAAAGAAGAGCTTAGAGCAGCGCATGCAGGAGGAGGCCCACTACCTCGTGGAAGCCATAAGAGAGGAGAAAG
Seq A exon
GTGAGTCTTTCTCAGGTACAGGATACTGAGCATCTTTCATTCATTGAAAAAGTCCCACAAAATGTCTAAGTGATCATCCTTGCCCTTCACTAGGTCTGGGTACTGAGGATTGAACAATGAACATCTAGCCGTGATCCCAGGCCAGGTGTTCGACAGCTAAGCACACAGATGGGTCAATAGACCTAGTGTTGTACGTAAGGTCTGATAATTAGTCTGACTTCCCAGGCATTAGCAGAGTACTTGGTACATGTCACACCCCATTTAGTATGCTCTGGCCAGACCTTCATGTGTGTGTACTTCTGGAATGTGTATTTCTCAGTCATATGAAGTTAATTTATTATAGGAAATAGAAATAAATGAATAACTTTGAAGGACTCATCTCTCCCTCTCCCCGTATCCAG
Seq C2 exon
GAAAACCTTTCAACCCTCACTTCAGTATCAACAATGCAGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGAGTACCATGACAGTAGATTTCAGGAGATGCTGAGGTTGCTGGATGAGGTCATGTATTTGGAGACAACAATGATAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031004:ENSRNOT00000012977:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATCTTCTCCAGTGGTCAGAC
R:
CTGGCTTATCATTGTTGTCTCCA
Band lengths:
310-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]