GgaINT0039370 @ galGal3
Intron Retention
Gene
ENSGALG00000010911 | F1NT95_CHICK
Description
NA
Coordinates
chr8:27478110-27482238:-
Coord C1 exon
chr8:27482089-27482238
Coord A exon
chr8:27478271-27482088
Coord C2 exon
chr8:27478110-27478270
Length
3818 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GTTTGCTTTTCCTTCTCCAGGAA
3' ss Score
11.96
Exon sequences
Seq C1 exon
GGCTGGTCTCCTCCAATGGGCACCTGTGGAAGCAGCAGAGAAGGTTCACCTTGACCACCCTTCGAAACTTTGGCCTGGGGAAGAGGAGCCTGGAGGAGCGGATACAGGAGGAGTGCCGATTCCTCACGGATGCATTCAGGGATGAGCAGG
Seq A exon
GTGAGGACCACTTCCCTCAGCAGTTGCATTGAAGGCAGAATCCAGCTTGGACTCTTTTCATTTCCACCATGCTAGTGCCTGCTGAAAAATCAGAGTCAAAGAATCATTTCAGTTGGAAAAGCCTGCTAAGATCACCAAATCCAACTCCAACCCATTTCCAGCATTCCCACAAACCATGTCCCTCAGTGCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATAGATGCAGCTGTGTAACAATCAAAACATTATTCTTACCCCACCTTTGTCCTCTTGCTGAATTTGAGACCTCTAGAAAATTCCATGAATCTGTCAGCACCGATGTTCACAATTAATTCTAATAGTATTTGCTCTCCTGCAGCCATTTCACATCTTCCTTTCCAAAGTAAACAACCATCTCTAAGAAGGTGCCCACTGAATACCATTCATTTCACTTGTTGACTATTTTCCCTCTGCTGATGGCGCTTTCTTCCCTTTTTCTGTGGAGACAAGAAGAGAATTAATTGTTTGCTTTTTCTTCTCCAGGAAATCCTTTCAACCCTCACCTTAAAGTCAATAATGCTGTTTCAAACATCATCTGCTCTGTCACCTTTGGCAACCGGTTTGAATATCATGATGAGGACTTCCAAAACTTGCTGCGGCTGATGAACGAGACTGCTATCCTCCAAGGGAAGATAATGAGTCAGGTACAGCCCTTATGCCCCCAGCACAGATAGCGTGCAGATTTGAAAGGCCATTGTTTCTTCTCTGTATTCAACTGCAAAAGCTCGAGCACTTTCTTAGATTCACAGATTATCTCAAGTTGGGAAAAATTCACTAGGGCCCTCAAGTCCACTTCCTGTCTCCACGCATAAATACTGAACATCCAAACCCTATGTCTTAGAGTGTTGCCCAAAGACTCCTTGATCTCGGTTAGATCAAGGCTGTACCCACTGTCCTAGGTGTCTGTTCCATGCTCACCGTTTCCTCTCACTTAGACTGACCTCCCCTCACACAGCTCCATGCCAGTCCCTTGGATCCTGTTGCTGTCACCAGAGAGCAGAGCTCAGCGCTGCCCCTCTGCTCTTTGCGACAAGGTGCAGGTTGCCATGAGGCTTCCTCTCTGCCTTTTCTATGGTGAACAAACCATGAGACTTCAGCACGCTTCATACATTTTGCTGTGTAAAGCCATCTTCATCTTCATAGCACTCCTTTAGAGCTCTCTGATAGCTTTATATCCTAATATATTGCAGCACACAAAACTACACAAGGTGAAGCCATCACCAAGCATAGGGGGCTGGCCAAGCCCAGGAGATGTTTTCCTCTGCTCTGGGACCATGAGATTCTCCTTGGTGCTTCCCACAGCTGTGTGGCACCACTCCATCACTGTATGCATGATAGTGAAGATGCAAGATGTGGTCCACCTGGATCACAAAGCTTGTCTATCCCTGGCTGGTTTTCCAGTGCTTTGGGAAGGAACTGAATGCAATAGAGATTTGGGGCTGGTCCATAGGAGAGATTATGAGAAGGATCATGAGCTAATGTGTAAGGGACATTTGTTGCCATTGCCCATTCCTTTGAAAAAGATATATCAGCCCATAACTTTTGGGCAATGTTCACATTGCTCTCCTTCCCCCTGCATCACCCCTCCGGACCACTGATTGCCAAGCAACCTGCTGTGACTCTGGAACACACTAGTCACTCTCACCATGGAGGTATCAATCCTTTGTCATGCTGTTCTGGAGATAGGTTAGTTCTATCTACTCCACAATGTAGGGCTGTGCTTTTGCAGGCTTTTCAAATTTTAAGAATGCAAGGGGTTTTTCAGTCCTTTCTTGCATTTGCTCATCTCTCTTTCTTTCCAAAGCTGTACAACTTTTTTCCGTCCGTAATAAAATACTTCCCTGGATCCCACCAAACCGTTATCAAAAACGGGAGGCTCATGAAAAGGTTTGTGTGCAAGAAGATCAGCAAACATAAGGAAGACCTGAGCCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAGGTCAGCAATGTGGAGCAAGGCCTTCCACAGTGGGGATTAGAGATCAGGAGGGCTGAGAAACAAATCAGATTCCCCACTTGAGCTGCTGGTGTGTCCATTTGTAAGCTTAGCATGGACATCAGGTTTGGGGCATCCACTGGAAGGATGGGGGTGAAGAGGGCATGCAGCTTCTAGCAAAACTCCTGGGACAGGACTGAGTCTGATTTTGACAAAGTTCTTGCTTTTCATCTGGAACTCATGCTCCATTTTCTGAAGCCCAACGGGAGAGATTTCTGTGAGGATAACCTGGTGGCGTGCACTCTCGACCTGTTTTTTGCTGGGACTGAGACCACCTCTACAACCATCCGCTGGGCCCTGCTGTATATGGCCATATATCCAGAAATTCAAGGTACAAGTAGCAAGAGGGCTGTCTGTTTCCTAATTGTAGCCCTTGTAGCTTGGTGAAAGTCTCTCTTTATTGAAAGAAAAAAGTTCAAACATTCTGTTCTCCGACAGATTTAGTGCAATTATTTCTTTTTTTTTTTTTTTTTTTGTATTTAAGTGTTCACCGTCAGTGTTCTAAAACTTGTCCTAGTGATTTTCTAATTCTTTTCCATGGGACAAAGAGGCAGATGTGCCCACTTGTACCACAAGCACTGGAAACCACTGTGGACTGTCCAGCAAAGGCAACAGGGGCTCTGGAAAGGGCCCATTTAATGTGTGGAGTGATGAACATGCAGACAGTTGCCACAAGTCCACTGTTGGCATACCATTGCCCTGGGATGGTCCTTGGGGGAACTGCACAGCAAAAACGTCACAGTGTCCCCAGGGCTTCTGTGGCTTTGCTGCACCATAGCTGATGGCTGCTCTTTCCAAACAGCCCGTGTGCAAGCCGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCATCCCTGGAGGACAGGAACAACATGCCCTACACCAATGCCGTCATCCATGAAGTGCAAAGGAAAGGCAACATCATCCCTTTCAATGTACCGAGACAGGCGGTGAAGGACACATTCTTGGCTGGTTTCCGGGTGCCCNNNNNNNNNNCATCAGAGTTGTGTTCTAGACCCTTCACAGCTTCCTTGTCATTCTCTGGACATGCTAAAAGGCATCAATGTCTTTCTTGAAGAGAGGGACCCAAAACTCAACTGAGCACTTGAGGTAAGCCTCACCAGTGCCAAGAACAGTGGGAAGATCATCACCTTGCTCTTGCTGACTAGACTATATCTGACACAAGCCAGGATGCTGTTTGCCTTCTTGCCATGTAGGCACACTACTGGCTCACCTTCAGCCAGCTGCCAGCTAACACACCAACATCCTCTTCCTCCTCATCTCATAAGTAATGCTAGCAAGCTGTCTTCATTCCAGATTCCCTCTACAGGTGTTTTGCCCTCAGATCAAATGATAGATGCAGCTGTGTAACAATCAAAACATTATTCTTAGCACACCTTTGTCCTCTTGCTGAATTTGAGACCTCTAGAAAATTCCATGAATCTGTCAGCACCAATGTTCACAATTAATTCCAATGGTGTTTGCTCTTCTGCAGCCATTTCAAACCTTCCTTTCCAAAATAAACAACTATCTCTAAGAAGGTGCCCACTGAATACCATTCATTTCACTTGTTGACTATTTTCCCTCTGCTGATGGCGCTTTCTTCCCTTTTTCTGTGGAGACAAGAAGAAAATTGATTGTTTGCTTTTCCTTCTCCAG
Seq C2 exon
GAAATCCTTTCAACCCTCACCTTAAAGTCAATAATGCTGTTTCAAACATCATCTGCTCTGTCACCTTTGGCAACCGGTTTGAATATCATGATGAGGACTTCCAGAACTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCAAGGGGAGCCAATGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911:ENSGALT00000017750:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]