BtaINT0007290 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86407235-86407932:+
Coord C1 exon
chr3:86407235-86407384
Coord A exon
chr3:86407385-86407771
Coord C2 exon
chr3:86407772-86407932
Length
387 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATCTCTTCTTCTGCTTCCAGGAC
3' ss Score
11.24
Exon sequences
Seq C1 exon
GCTTGATCATGTCCAATGGCCACATATGGAAAGAGCAAAGAAGGTTCTCCCTGACAGCTCTGAGGAACTTTGGTTTAGGAAGGAAGAGCTTAGAGGAACGCATACAGGAAGAAGTTGCCTACCTCATCCAGGCAATAGGAGAGGAGAAAG
Seq A exon
GTGAGCAGGTCCTAGGACAGGTACAGGGACTGTGGTTCATGCTTTCACTAACCAGATGCTCATCAATACCTACATTTCTGTCATAAGCCCAGGACTGTGTTGGGTGATTAGGCGATAACAGTGAACAGCTAACCATGAACTGCCATTATGGAGCTTGAGTGTTAAGAAGAAGATGGATATAAAACTCATTATTGGTTTTAAATCCTGGTCATCAATTTGACTTCCAGGCATTGACTGAGTACTTGCTGTGTGTCAGACCTATGTAGGGTGCTGGGACCACAGTTTCAGATATAGTTCTGTAGTCAGTGTGTTATATGCCACGTAGAATATACTCTGGAAAATAGGAACGAACCAATCTGAAGTCTCTATCTCTTCTTCTGCTTCCAG
Seq C2 exon
GACAGCCTTTCAACCCTCACTTCAAAATCAACAATGCTGTTTCCAATATTATTTGCTCCATCACCTTCGGGGAGCGGTTTGACTACCAGGATGATCAGTTCCAGGAGCTGCTGAGGCTGCTGGATGAGGTCACCTACTTAGAGACAACAGTGTGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085:ENSBTAT00000056737:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.1=100)
A:
NA
C2:
PF0006717=p450=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGATCATGTCCAATGGCC
R:
CTGGCACCACACTGTTGTCTC
Band lengths:
311-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]