RnoINT0044389 @ rn6
Intron Retention
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115215320-115216045:-
Coord C1 exon
chr5:115215896-115216045
Coord A exon
chr5:115215481-115215895
Coord C2 exon
chr5:115215320-115215480
Length
415 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TTCTCTTTTCCCACCTCCAGGAC
3' ss Score
12.3
Exon sequences
Seq C1 exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACTCTGAGGAACTTTGGACTAGGAAAGAAGAGCTTAGAGCAGCGAATACAAGAGGAAGCCTACCACCTTGTGGAGGCCATAAAAGATGAGGGAG
Seq A exon
GTGGGCATTTCACAGTGCAGGTGTAGGGGGCTGTGGTCTTATGTTTGTTGAGCAAATTTTTATTAATTGCCTAAGAGTTTATCCTGGGCCTGCTCTGGGCTAGGCACTGAAGATTGAACAGTGAACTTATAGCTCTGACCTCGACCTAGAGAGCTGAAGCCTAGCAAATAAAATGGGTTATTAATCACTTTGTTGACCTTAAATCCTCGTCACCAGTCTGACTTTACAGCCATTGACAGAAACCTTGGTTCATGTCAGCACTGTGCATGTGCTGTGGCCAGAGCCCATCCATTATTTCATTCTCTCCAGTAATTATGCAGGGGAAGGAGCAGTTGAGAGATTGTTTTCTTTATAGATAAATAATACAAACATAAATATCTTTGAATGGCCCAAGTTTCTCTTTTCCCACCTCCAG
Seq C2 exon
GACTGCCTTTTGACCCTCACTTCAATATCAACAAAGCAGTCTCTAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGAGTACCATGACAGTCAGTTTCAGGAGATGCTGAGGCTACTGGATGAGGCCATGTGTTTGGAGTCATCAATGATGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224:ENSRNOT00000012503:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGATCTTCTCCAGTGGCCA
R:
TGGCACATCATTGATGACTCCA
Band lengths:
310-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]