GgaINT0039179 @ galGal4
Intron Retention
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25615097-25616922:-
Coord C1 exon
chr8:25616782-25616922
Coord A exon
chr8:25615258-25616781
Coord C2 exon
chr8:25615097-25615257
Length
1524 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
TTTCATTTTGTCCCCCTCAGGGC
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTCTCATATCCTCAAATGGTCACATATGGAGGCAACAGAGAAAGTTTGTTTCAGCAACGCTGAAAAGCATTGCGGTCAGTTTTGAGTCAAAAGTGCAAGAGGAGAGCCGGTACCTCGTGGAGGCGATGGAGGAAGAGAAGG
Seq A exon
GTAGGCGGCCCATGGACAGCACTGTGCCCAAAGCTTTCAGCCAGCCCCTTGCCAGATGAATTCACACCAGTGTGACTCCTAATATGCAGGGCAACTCCGCAGTAGCACAAATCTCTATCTTAGACTTCCAGATTGTGCCTTTTAGGTCTGCCATTTCAATTCTTCCTTACTAATATTAAACAAATATATACTAAGTGCTTACTAGAATCGGTATGTTTTATGTGTCTAAGAAAGCCCTTTCTATAGCCTACAAAGGCAGAAATGCAGCTCTCATGATATCAAGCACGTTCGCTCGGAGGCTCAGTTAACCTCTGCTTGTCCTTGGTTTTGCAAAGTATTTTAAAACTTGTTTAGTCAGGCTTTCCTTTTGTATCATGCACAGATGAAGCTTGTGCTTTGCTCTTTTATGGTCAGGCTTTTAAGAAGTGCCAGAGAGATATTAGTAAGAATAATTTGTATGTTGGTATATGGGTGATGTTGCACTTCAGCTTTAAATAGAAGCAGATGGGGTTTAGCTAATTCTATGGAGCTATATATAGTAAACAAGAAAGATCTAAATAGGAATTGTGAAATTATATACTGAACTTGCTCCATTTTAATTGCTGTTGCTCTGAACAGGCCAAATACTTCATGTTGCCAATTGATTATAGTCCTTTATAGTCCTAATCAATAAACTAATTAAGCTGCAGTTTTGGGCCTTTCTTCCCATTAGTAATGACAAATAGTGATCTTGTCCATCACTCTGGTATCTGAGCACCAGCCCAGCTTAATTACTTTCTCAGAGAGTGGAGAGATGAGCAGTGCTGTGCATGGTGCCTTGCATCTCAACACGATACTCCCCACCGCGCCTGCACAGCTCAGGGCCATGCTGGACTCATTACAGATATTACTCTCTCCTGTCACAGCAAGTAGTGATCTGGGCTTTCTAAATGTGCCCTGGGAGATGGTGACCTCTGCTCGATACCTCTCCTGAGGGAAGCAGATGTGATGAGCATCATGCCACGCTTTGCTCCTGTAGGAGCCGATGTGCATCATGTCTGTTGGCCACGTGAGCTATTGCTGGATTTTCCTGCTTGAATTCTTTGTGGTGCACAGACAAAGGCCAGTACAATGACATGTTTGCAATGTGATTGGTCTTAAGTTTCCTGCCCCAGGCAAAGCTCTGAATGGAACTTCTCTTGCTGTTTAAGATAGAAACTAGTGACCAGTTGGAGCAAACAAGCCCAACAGCCATAACTGCTTGTTTCCACTGGGAAATGGCTCAGATCCTACTTCAGAAGCTTGGTATTAACACTGGGGTGTGCCACAGCCTAGATGGAAGGGGATGTCCTCGGAGAAAGAACACTGGGGATCACAGCACACAGCTTTTAGAGGTGGTGGGGACCCCAAGACACAGAGTCTTGCATCAGCATGAGTAGGTAGTAGGTGAGGCCTTACCCCATTTTCATACCTGTTGATCTGGTACAGAATGTTATATCCGAGATTAAAAACCAAACCTCACAGCTTTCATTTTGTCCCCCTCAG
Seq C2 exon
GGCAACCGTTTGACCCTCATTACAAAATTAATAGCGCTGTTTCGAACATTATCTGTTCTATAACTTTTGGGAACCGCTTCAACTACCATGACAGCAACTTCCAGGAATTACTGCACTTGCTTGCAGAAACACTGCTGCTGATAGGAAGTTTCTGGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413:ENSGALT00000018621:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.7=100)
A:
NA
C2:
PF0006717=p450=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCATATCCTCAAATGGTCACA
R:
CTGGCCCCAGAAACTTCCTAT
Band lengths:
302-1826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]