MmuINT0045047 @ mm10
Intron Retention
Gene
ENSMUSG00000081225 | Cyp2j12
Description
cytochrome P450, family 2, subfamily j, polypeptide 12 [Source:MGI Symbol;Acc:MGI:3717097]
Coordinates
chr4:96121437-96122663:-
Coord C1 exon
chr4:96122514-96122663
Coord A exon
chr4:96121598-96122513
Coord C2 exon
chr4:96121437-96121597
Length
916 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CACCCTCTCCCTACCTCCAGGAC
3' ss Score
12.59
Exon sequences
Seq C1 exon
GATTGATCATTTCCAATGGCCAGACATGGAAGGAGCAAAGAAGGTTCGCACTGATGACACTCAAGAACTTTGGATTAGGGAAAAAGAGCTTGGAGCAGCGCATACAGAAGGAGGCTGACTGTCTTGTGGAGGCCATAGGAGAGGAGAAAG
Seq A exon
GTAGGCATTTCGCAGGGTGATGCAGGAGGCTCTTGCCATTCTATTCACTGAATAAGTTTTTAATTGTCTAAAGCTTTTCTGCAGTGGGCACTGAGGATTGAATAGTGAACATATAACTGGGATCCTATCCCAGGAGGTCCACTGTTTAATGGCAAAATAGATCATTAAACAAATTGCTTAAGTTAAACCCTGTTTATCTATGTGACTTCCCACATATTGACAGTGTTTTTGAATAATGCCAGCCACCAGTAGTGGGCTGTGGCAAGAGCTTTTTATATTATCTTCTGTTGTGAATATTTTATGTCACACTAAATAGAGACATCATAAAATAAAAAGAAAGAAAGAAAAGAGAGATAGGGAAAGAAAGAAGGAAAGAAAAAGAAAGAAAAGAAAGAGGGGGGAGAAAAAGAAAGAAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAAAGAAAGGAAGGAGGGAGGGAGAAGAAGAGAGAAAGGAAGAAAGAAAGAGGGAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAGAGAAAGGAAGGAAGGAAGGAAGAAGGGAGGGAGGGAGAAGAGAGAAAGGAAGAAAGAGGGAAAAAGAAAGAAAGAGAGAGAGAGAAAGGAAGGAAGGAAGGAAGGAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAGAGAAAGAGAAAAGAAAAACTATCTTTGAAAGACTTATGCTTCACCCTCTCCCTACCTCCAG
Seq C2 exon
GACAGCCTTTTGACCCTCACTTCAAGATCAACAGTGCAGTTTCCAACATCATTTGCACCTTTGCCTTTGGGGAGCGCTTTGAGTATGAGGACAGTCACTTTCATGAGTTGCTGAGGTTATTAGATGAAGCCACGTGTTTGGAGGCATCAATGATGTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081225:ENSMUST00000097972:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGATCATTTCCAATGGCCAGAC
R:
TGGCACATCATTGATGCCTCC
Band lengths:
310-1226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types