BtaINT0010513 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101317238-101320053:+
Coord C1 exon
chr5:101317238-101317387
Coord A exon
chr5:101317388-101319885
Coord C2 exon
chr5:101319886-101320053
Length
2498 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGTCCTTTGCATTTGTACAGGTT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTGGGTTTGAACTTCAGCCCCGGACAAAGTTTCCCGGCCTCCCAGGCCCACCTTCGAGTCACCGCTTCCCCTCAGTCCCTCTGCGCCCTCCGCGCCGTGGACCAAAGTGTGCTGCTCATGAGGCCCGAAGCTGAGCTCTCAGCAGCCACG
Seq A exon
GTGAGTTCTGTGAGCCCCAGGGGCCAGGAAGGGCCCCACGGGCAACTCAGAGCAAGGAGAGTGGGGTGGGTTCTATTAAACTTATATTTATCTAGGAGTTAATCATTTTGAGCTCTTTCATGTGCACCTTTTTTTTTTTTGGTAAGGAAGATAATACATATGAATATATAGGTATAAATGATGTACTCCAAAATCCCTGATATTGAAGAGCTTTATGAACCCAATAATAAGAATTTTCAAACTAGTTTCAATATTTCAAAAAGTCTTAACATAAGTGGTACATATACGGGCACTAAGACTGCACAGGCTAAACGAAATATCAAATTTTTATAAGAATTGTATCACAGGATCCTTGGGGCTGGTGCACTGGGATGACCCGGAGGGATGGTACGGGGAGGGAGGTGGGAGGGGGGTTCGGAATGGGGAACACGTGTACACCCGTGGCGGATTCATGTTGATGTGTGGCAGAACCAATACAATATTGTAATTAGCCTCCAATTAAAATAAATAAATTTAAATTTAAAAAAAAGAATTGTATCTGTTGTAACATTGCATTTTCCAAGATGAACACAGTTTCTGAAGGAAGAGCTATATTTTCTCTGATGAATACAAATTAGGAAAAATTAATTGCTGTGTGACAAACGACATTAATAAGTGAAACCTTTTAAAATATTGAGTTAGGGGACTTCCCTGGTGGTCCAGTGGCTAAACTCCAACCTCCCAAAGCAGGGGTCTGGGGTTTGATCCCTGGTCAGGAAACTAGATTCCCTCATGCGCAACTAAGACCCAATGCAGCCAAATAAATACTAAAAAAGAAAATAATACATAGATAAATAAATTAAATGAAATAAAATATTGGGCTAATAGGAAAAATAACAAAAGAATGTGCTGAGTGTAATAACAAGAAACTACTTAATATGTCCTAATAGTAGTTTGCCCATTTCTTCAAATTTTCAATGAGGCCAATTGGAATACCTCTTACTGAAGGTTTTTTTACTATCAAAATTTTATAAAGGGAAAGTTATGTTTTTTCTTCCCTACAAGAGAAACTTATAAGTAAAGGACTTTTTGGTCCTTCCAACGGTATTTAATTAAAAATCTTAAGATACTTCTAAAGGAAATTTTAAATGCATAGTGGAAGCAAGAAATATGTGGGCAAATTAAATTACTGTGTTAAGCTTATATAACATAATTTCATAGTTCTCAAAATTTTTTTAAATTACAACAACCTCAGTGGATAGATAAGGCAGAAGATTCTACTAGTTTGTTAATAATAAACCAGGCGCTTTCAGGTATTTAGGAGCAGACCTGGGTTAGAACAAGAGTTCCTCTCAATCTGTGATAATGTTTCAGTATTGAAATGCCTGCAGCGAAGGGGAGCCTGGTGGGCTGCCTTCTATAGGGTCGCACAGAGTCAGACACGACTGAAGCGACTTAGCAGCAACAGCAGCAGTAGCATAAGTCATTCAGTCCACACATACTTATTTAGTGCCTACTGAGTTCTGGATGTGCCTACTGTGTGCCTAAATTCTGGGGATCTCAATAGTGAACTACTAGAAAGTAAAAAATCTATGCAGTCATGGATCTTACATTTTTGTAGATGAGATAGACAATAATTACATTATACGCTTTCAAGAAAAATAAAGCAGAGCAAGGAGACAGAGATGCTAAGAGGGAGCTGCCCTTGAGAAAGTGTTTCATTTCATTGTGCTACTCACTTTGCTAATTTAGTCTTGTCAACAATTTTGTCAGGATTTTCATGTTTGTTTTATTCTTCAAAGTATCATTTTCAGTATTCTACAATAAAAGTTTATGTATTTTATAAAGATATGGAGCATTTTGTTCCCATCATTAATACTAAGAAAATACCATCCTGACCTATATAGAGGATACAGGCTTATCCATGTGCCTGTTTGGAACATGCATCCATTACTTTGTTATACACTGAGTCTGTTGCTAACCACCAGGTAGAGAAAAAAACTATTACTTAATTCTCTCATCCCAAAGTGTTACACAATCTCTCAAGTACAGCAAACCTCAATTTCTCTTAATTAAATTTTATTTCATTCCAACATAGAGTCTAGGGTTTGTCTCTGAATTATGTAACAAAGGATTATGATCTTTGGGTATTTAGATAGGAATGTTTTGGGGTTTTTTTCCCCCTAACACTGTTAAACATCTTCAAAATCATCTTCTCTATAAATTGTCTAAGCAACAGAGCCACTCAAAGAAAGTTTGGCAGTGATTAGTCTTTTCTTTTCTCCTTGAACTTAAGAAAAATAAGCCACAAATAATTTTGGCCTTTTTTTTTTTTTAATTGTTTAATCCTTTTGTGGGGAGATGGTGCCCCCCACCCCATACTGCACAGCATGTGGGATCTTAGCTCCCCAACCAGGGATCAAACTCTAGAGCCCCCTGCCTTGGAAGCATGGACTCTTAACCACTGGGCCTCCACGGAAGTCCTTAATTTTGTCCTTTTGTCCTTTGCATTTGTACAG
Seq C2 exon
GTTTATAACCTGCTACCAGTCAAGGACCTCAGCAGTTTCCCCTCAAGTGTAAATCAACAGGAGGAAGACAATGAAGACTGCATCAGTCATGACAATGTCTATATCAATGGAATCATGTATTTCCCAGTATCAAATACAAATGAAAAAGATATGTATAGCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137:ENSBTAT00000006167:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(26.2=78.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]