GgaINT0103748 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79370521-79371040:-
Coord C1 exon
chr1:79370891-79371040
Coord A exon
chr1:79370692-79370890
Coord C2 exon
chr1:79370521-79370691
Length
199 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GGTTGTTTGCATTTTCCAAGGTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
GTCAACTTGAGTTTTGTACCCAAAGAAGAACTTCCTGCTTCCAAGACAATCCTGAAACTCCATTCCTCACCAAGGTCCCTGTGTGCCCTCCGTGCTGTGGACAGGAGCGTTCTCCTCATGAAGCCTGAAGATGAGCTCTCTCCCAGCTCT
Seq A exon
GTAAGTCTTTGCTATTTCTAGTAATAAGGAATACAACAGTTAACTAGGTACTTATTAACAACAGGATGGACATGAGGCCACATATGGCATTCACCATAACTGGTCTTAGTGGCTGTGTTATATCACTGGACTGTTAGTTTCTGTGTCCCTGTGAGTGCTAACTTGCCACATTTTTACCCGGTTGTTTGCATTTTCCAAG
Seq C2 exon
GTGTATAACCTTCTCCCAGTCAAGGAACTCCGAGGCTATAGCTTCAAGGACTACTACTTGGAAGAAGAAGATGTAAACCCCTGTGTGTCACTTGACAACATATTACTAAATGGATTCACCTATATACCCATTTCTCCTGATGGTGAAGGTGATGCTTATGACATTCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(25.7=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTCACCAAGGTCCCTGT
R:
GCATCACCTTCACCATCAGGA
Band lengths:
244-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]