BtaINT0010528 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101334297-101340211:+
Coord C1 exon
chr5:101334297-101334477
Coord A exon
chr5:101334478-101339987
Coord C2 exon
chr5:101339988-101340211
Length
5510 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AATCTTTTTCTCACATCCAGATA
3' ss Score
8.58
Exon sequences
Seq C1 exon
CACCCTGTCGTCCGCAATGCCCTGTTCTGCCTGGACTCAGCCTGGAAGTCAGCCAAGGAAGGATCCCAAGGCAGCCACGTCTACACCAAGGCACTGTTGGCCTATGCCTTTGCCCTGGCGGGTAACCAGGAAAGGAGGACAGAGGTACTGACGTCACTGTATGAGGAAGCCGTGAAGGAAG
Seq A exon
GTGAGAGCACACCCGAGAACTTTCTCCCATCCCATATTCTCGGGATCAAGAATTCCACACCAAAGGTCTCCCATGACTACCTCTCAGGATCCCTTTCCCTCTCTTCTTTAACTATATCATTATATTTACATTTTGTTTATTTTTTAATTTTCGGCCACACTATGCAGTATGTGGGATCCTAGTTCCCTGACCAGGGATCGAACCCACACCACTTGCATTGAAAGGCTCAGTCTTAACCACTGGGCCAGCAACGAAGTCCCTCTATATCATTATAGACTCGAAGTTTCTTACTCAAGTTACACATCCAAAGATTAAAAGGCAGTAGACTGTAATAGTAAGAAGCTTGGCCTCTGAAGACTAGTGCTAAAAAAGTATATGGCCTAGAGCAAGTGCTGTACAAGTATTAGCTATTGGTTAAGATATCAGTTCTCAATATATGCCCCACCCACACCCAGTGTATCATATCATTTTAAACATAAGACTGAAAGAAGTAATCCCATGAATAAATTCTAGTGTTTTATGCTCATTTCACAAAACTGATGATGTTGGACAAGTCTATTCATTATCCACACAATATTTCTGTATATGTAATGGTCTATATGAGAGGTAGAAGAAGTAAAAATAAAATGCAAATAATAAGATATCCAATAAAACATATCCTGCTTTTCTCCCTTGACAGTGCTATTAGTTGTTTACTCTTATAATGCACTGAGAAATATTTCAGATATACAAAAATGCGTAAAGAACAATTAGCAAATACCTTTAATACCTCCCTTTCAGCTTAAGAAACAGAATATTACCAATGCTGGAAAAACCCTCAGGGTACCACTCCTACTCTAAAAAGTAGTTGATCTAGAATTTGTCATTACAATCTCCATAGATTTATCTTTTTATTGCATGTGTAATCCTAAATAATATTCAGAATGTTTACATTTTTCATCTTTAGATAAGAACTATCATCCTTCTAAGTATTTCTACTTGATCCTTGTCTGTCTGCTTACCTTTTGTATTTTAAGTTCAATGTTAGGCTGAAAGGAGTCCCTTGTACAGGTGTGTTAATTTTCACTGCTGCATAATACATTCAGTTCAGTTCAGTCATTCGGTCATGTCCGACTCTTTGCAACCCCATGAACTGCAGCAGGCCAGGCCTCCCTGTTCATCACCAACTCCTGGAGTTCACAAACTCATGTCCATCAAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCGTCAGTCTTTCCAATGAACACCCAGCCCTGATCTCCTTTAGAATGGACTGGTTGAATCTCCTTGAAATCCAAGGGACCCTCAAGAGTATTCTCCAACACCACACTTCAAAAACATCTATTCTTTGGTGCTCAGCCTTCTTCACAATCCAACTCTCACATCCATACATGACCACTGCAAAAACCATAGCCTTGACTAGATGGACCATTGTTGGCAAAGTAATGTCTCTCTTTTCAATATGCTATCTAGGTTGGTCAGAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATGTGCAGTGATTTTGGAGCCCCAAAAATACAGTCTGACACTGTTTCCACTGTTTCGCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAAATTTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCATCACTTTCTGCCATAAGGATGGTGTAGTCTGCGTATCTGAAGTGAAGTGAAGTCGCTCAGTCATGTCCGACTCTTTGCAACTGTAGTGTACAGGGCTCCTCCATCCTTGGATTTTCCAGGCAAGAATACTGGAGAGGGCTGCCATTTCCTTCTCCAGGGGAACTTCCCAACCCAGGGATTGAACCCAGGTCTCCAGCATTGTGGGCAGACGCTTTACCGTTTAGGCCACAAAGAAAGCCACAACTTGCATATGTGAGGTTACTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCATTTCTCATGATGTACTCTGCATAGAAGTTAAATAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGCATATAGGTTTCTCAAGAGGCAGGTCAGGTAATCTGGGTATTCCCATTGCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATGGATGTTTTTCTGGAACTCTCTTGCTTTTTCAGTGATCCAGTGGATGTTGGCAATTTGATCTCCGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACACCTGGAAGTTCACAGTTCACATATTGCTAAAGCCTGGCTTGGAGAATTTTGAGCGTTACTTTACTAGCGTGTGAGATGAGTACAATTGTGCGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATGTGCTAGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAACTGGAATTCCATCACCTGCACTAGTTTTGTTCATAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATATCTGGCTCTAGGTCAGTGATCACACCATCGTGATTATCTTGGTCATGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCGCCTCTTCTTAATATCTTCTGCTTCTGTGAGGTCCGTACCATTTCTGTCCTTTATCAAGCCCATCTTTCCATGAAATGTTCCCTTGGTATCTCTGATTTTCTTGAAGAGATCTCTAGTCTTCCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGATTGCTGAGGAAGGCTTTCTTATCTCTTCTTGCTGTTCTTTGGAACTCTGCATTCAGATGCTTATATCTTTCCTTTTCTCCTTTGCTTTTTGCTTCTCTTCTTTTCACAGCTATTTGCAAGGCCTCCCCAGACAGCCATTTTGCTTTTTTGCATTTCTTTTCCATGGGGATGGTCTTGATCCCTTTCTCCTGTACAATGTCATGAACCTCCATCCATAGTTCATCAGGCACTCTATCTATCAGATCTAGGCCCTTAAATCTATTTCTCACTTCCACTGTATAATCATAAGGAATTTGATTTAGGTCATACCTGAATGGTCTAGTGGTTTTCCCTACTTTCTTCAATTTAAGTCTCAATTTAATAAGGAATTCATGATCTGAGCCACAGTCAGCTCCTGGTCTTGTTTTTGTTGACTGTGTAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAGTCTGATTTCGGTATTGACTATCTGGTAATGTCCATGTGTAGAGTCTTCTCTTGTGTTGTTGGAAGAGGGTGTTTGTTATGACCAGTGCATTTTCTTGGCAAAACTCTATTAGCCTTTGCCCTGCTTCATTCCGTATTCCAAGGCCAAATTTGCCTGTTACTCCAGGTGTTTCTTGACTTCCTACTTTTGCATTCCAGTCCGCTATAATGAAAAGGACATCTTTTTTGGGTGTTAGTTTTAAAAGGTCTTGTAGGTCTTCATAGAACCATTCAACTTCAGCTTCTTCAGCGTTACTCGTTGGGGCACAGACTTGGATTACTGTGATATTGAATGGTTTGCCTTGGAAACGAACAGAGATCATTCTATCGTTTTTGAGATTGCATCCAAGTACTGCATTTCGGACTCTTTTGTTGACCGTGATGGCTACTCTATTTCTTCTGAGGGATTCCTGCCTGCAGTAGTAGATATAATGGTCATCAGAGTTAAATTCACCCATTCCAGTCCATTTTAGTTCACTGATTCCTAGAATGTCGACATTCACTCTTGCCATCTCCTGTTTGACCACTTCCAATTTCCCTTCATTCATGGACCTGACATTCCAGGTTCCTATGCGATATTGCTCTTTACAGCATCGGACCTTGCTTCTATCACCAGTCACATCCACAGCTGGGTATTGTTTTTGCTTTGGCTCCATCCCTTCATTCTTTCTGGAGTTATTCCTCCACTGATCTCCAGTAGCATATTGGGCACCTACTGACCTGGGGAGTTCCTCTTTCAGTATCCTATCATTTTGCCTTTTCATACTGTTTATGGGGTTCTCAAGGCAAGAATACTGAAGTGGTTTTCCATTTCCTTCTCCAGTGGACCACATTCTGTCAGACCTCTCCACCATGACCCACCCATCTTGGGTGGCCCCACAGGGCATGGCTTAGTTTCACTGAGTTAGACAAGGCTATGGTCCGTGTTATTAGATTGACTAGCATAATACATTACAATATACTGAAAGGTCGTAACTTATATAGAGTGTCTCTTCTCATGGATCTTTTCTTGTTTATTTACTTCTGTGGCAAACCATGATGCAATGAATACTCATATTCTCCTTGAGGGGGTAGTACCTGAGTTTGTCTAACTTGAACTTGGAAAGCATAACCGGTGGATTCATGAGCTCAGTACATTTTCCCCTTTGCTGGATTACTGCCAAATTACTCTCCAAAGAGCTGTTTACTTCCCACAGCAGTATAAATCAGAACCTGTTATTTCACACCCTGTCAGCGTTTGGTATTTTGAGAATTACTCTACTTTTTTAATCTAATCAGTGAAAACTCCATTATCTCATGTGATTTGTGATCCTCATAAGCAATCTCCAAAGACAGGCTTTATAGAAAACTGAACAAACCCTGCTGCTACTAAGTCACTTCAGTCGTGTCCAACTCTGTGCGACCCCATAGACGGCAGCCCAACAGGTTCCTCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTAAAGTCGCTCAGTCGTGTCCAACTCTTGGCAACCCCATGGACTGCAGCCTACCAGGTTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTATTGGAGTGGGTTGCCATTGCCTTCTCCGGGAACAAACCCTAGACAAGGTTAGAATAACATCAGATACAGGAAATTACTACAACCAATCAGAGAACTTGGTCGGCTATTTCTTCCACCAATACAACTGCAGCAACCATTTCACAACTTGGATGGCTGTAGGCTTTGGACTCCAACAACATGACCGCCTTAGCCCAGGTTCTATGAGAAGTTAAGTTCAGCTTGTCCCATAAGGAAAAGCATCCAGATAAGGTTTAACAGACTATCATTGGAAGGAAACCCTCACTGCAGGTCTGGCTCCTGTACTTTTACTTGAAGTTGAACATGAGTATGTGGTCACTTACATACCACATGAAAAAATCTTTTTCTCACATCCAG
Seq C2 exon
ATAATACCATCCACTGGACACGACCTCAGAAACCCAGGTTGCTCACGGAGGACATTTACCAACCCAGGGCTCCGTCTGCGGAGGTGGAGATGACGGCCTACGTGATCCTTGCTCACGTCACGGCCCAGCCGGCCCCGAACCCAGAGGACCTCAAACGTGCCACGAGCATCGTGAAGTGGATCTCAAAGCAGCAGAATTGCCAGGGGGGCTTCTCCTCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137:ENSBTAT00000006167:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]