GgaINT0121134 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79205249-79206221:+
Coord C1 exon
chr1:79205249-79205411
Coord A exon
chr1:79205412-79206006
Coord C2 exon
chr1:79206007-79206221
Length
595 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TACCTCCTTCCTTTTCCCAGGTG
3' ss Score
10.49
Exon sequences
Seq C1 exon
AGTACAGTGGTGCGCAAGGCTCTGGGGTGTATCATTCCTTCCCTTCCCAAAGCTACCAGCACTTACACACAGGCCCTGCTGGCCTACACCTTTGCCCTGGCTAAGGATCCTCAGCGCACACAAGAGCTTCTTGACATACTTGATGAAAAGGCAATCAGAGCAG
Seq A exon
GTATGGAAGCCCTAGTGCCAGACAAACATCAGAAAAAGGGTAGATGACCTTTTTGAGCCCCTTGGTTACATGCAACCTGAAAAGACCGTACCCTTACTCATTACCCTTTAGGTCTTAATTTCTGTCCTTCATCAAAGATAGGCTTGCAGACTGTCTGTCTAAAAAACTAAAGTATGTTCTGGCAATACTGTGCTGTGGGTGTTGATTTCCTTCAAAGCTTTTGACCTTTTCTGGCATCCAGAATGGAGGTTGTGCTCTGAAAGTAGTTGAGTTTCTTATGCAGGACTGCAAAGTGCTCAACAAAGCAAACTGGCAAACTGCCTGACTTCTTCTTATTCCCTGACAGAACCAGCTAGTGGGTAGCTAGCTAGTATCAGTCAGCTAGTTTACCTGGCAAACAGGAAAATGAAAAAATCAAATGCCTGGGAGGTATGCTTGATTATTGGCAAGTTACTTTTTTGCTTTATAAATGGCTCTTCAATGTGTAATACATAGTACTGGGTACAGTCCTTGCATACGCAACACTGTGCCTTCTAGGCCTCAAGATTTCTTCCCTGATACCCCTCAATGTCATCTACCTCCTTCCTTTTCCCAG
Seq C2 exon
GTGGGCAGATCCATTGGAGTCAGACCCCATCCAAGGCACACAGCACTAGCCTTTGGTCACAGCCACTGTCTGTGGATGTGGAGTTAACAGCTTATGTCCTCCTGGCCCTGCTCTCCAAGCCAAATGTCACAGAGGCTGACTTCACCATAGCCTCTGGCATTGTGGCGTGGCTCACCAGACAGCAAAATGCCTATGGAGGATTTGCCTCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.0=100)
A:
NA
C2:
PF076789=A2M_comp=PD(15.4=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGCTCTGGGGTGTATCA
R:
AGGCATTTTGCTGTCTGGTGA
Band lengths:
342-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]