BtaINT0010563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101504815-101507053:-
Coord C1 exon
chr5:101506891-101507053
Coord A exon
chr5:101504832-101506890
Coord C2 exon
chr5:101504815-101504831
Length
2059 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TAGTGGCTTGGTTGACCAAGCAG
3' ss Score
-5.34
Exon sequences
Seq C1 exon
GACCCAATGGTGAGTCAGGGGCTGCAGTGTGTCAAGAGTTCTGTTTCCTCTACCACCAACCTGTACACACAGGCCCTCCTTGCTTATACGTTCTCTCTGGCTGGAAACATGAACATCAGAAACATTCTTCTTGAAAAGCTAGATCAACAGGCTATTGTCTCAG
Seq A exon
GTATGTTGGCCATGTTAGCTTTTGCTTTGTTTTTTGCCACACTGCATAGTATGCAGAACTTCCCAGACCAGGGATCAAACCCACTTGGATGCCAGGGAAGTCCTTTTTATTTTTTGTCATGATGTGTGGCTTGCAGGATCTTAGTTCCCTGACCAGGGATCGAACCCAGGTCTAAAACAGTGAACCCAGGTCTAAAAAGCTCTGAGTCCCAACCACTGGACTCCCACGGAAGTTCCAGTTTTTTTGAAATTGTGAAAAGATGTGAAAAATTTCCCTAGTCTCTGTAGTCGCGCACATGTTCAGTTCTAGGATTCATTTTAGTAAAAGTTAAGTCATAAAATCACTACTAAGAGGTTTGTGGGAAAACCCCTGAAAGTCCTCAAAGAGCATGTTATATTTTTAACATGAAGAGAAAATAGATGGTAGAAGCAGGTCAGAAAATGTACTGGCATTGGAGAATCCCTAGTTTAACAGTTCTTTGGTGTAAAGCTACTGAGGCTGATGGGGTAAGATGAACTTAGAGATTTCTCGAGGTCCTTCTCAAACTTTGGATGTATTTAAGAATAATTTGCAATATTCTGGGAATTTGCTATTGGTCCAGTGGCTAAGACTCAGCACTTTTACTACTCTAAGATCCCTAAGATCCTGCAAGCCCTGTGGCATGGCCAAAAAAAATTAGATATTCTAACAGATCTTGTAAATAAAATATTAATGCTCTTTATTTAATATTATACTTCCAGGCATAAATTTAATCTCAGCTTTCATTTATACAAGTGTCATTGCTGAATTGTCCTCTCATCAGGGCTCTGGGTAGATATTTGGCCTGTGTATAAGCAACTCCAGTCCTGGAACGGGGGTCTCAGACAGTGGGTGGAGTTATACCTGCTCAGGTATATATCAACTTAATGTAATCATATTTTGCTCATTATCTTGCATTGTAGGCTCACATGTTTTCTTTTGTTCTTCCACTTAGATTACCTCCTTTGGGCTATGTATTTATTATCTCTGAACTTATATATTTATATTAAAAATTTATTTTTTGGCTGTGTCAGGTCTTAGTTGCAGTATGCAGGATTTTTCGTTGAGGCTCACGGACTCTCTAGTTGCAATGTGGGCTTAGTTGCTCTGTGGCATGTAGGACCTTAGTTCCCTGACCAGGAATCGAACATTTGTCCCCAGTGTTGCAAGGCATATTCATAACAACTGGACCACCAGCGAAGTCCCTAAACTTATATTTAATAAGACTTCTAGCTTCCACTCCTCATTTCCACTTGTTGTTCTTTATCTTCAAGTTACCGTTGTGGCTGTCACAGAAATGGGATTTGACCTCATCATCTACTTGCTTGCTCTCATTAGCATTTCTTCTGTGGTTTCTCAGCATTTTTATGCATATTCTCCCATATGTTATCATTTCTGGAGGCATTTATTGATGCTCCCAGCTTCACCCAAGGGAATTCTGTGTGGGTGTACACACATGCACACACAGACACAAATTCTTGCATATACATTATGGCCAATAAGTCAGAAGATTTGAGAAATATTTTTTTCTGACTGATGATTACTTTTTGGTTGTTACTTTCTCTGATTTGGGGCTTCCCAGGTGGCTCAGCAGTGAAGAATCCACCTGCCAGTGAAGGAGATGTGGGTTCGATCCCTGGGTGGGGAAGAGCCCCTCAAAAAGGAAATGGCAACCCATTACAGTATTCTTGCCTGAAGAATTCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCACAGGGTCACACAGAGTCAGACATGACTGAAGCAACTTGTCACACTTGGTGCACACACATTTACAAAGTGAAAATAGGAAAGTCATTTCCTTCCAAGACTTTCCTAATCATGCGTTTTTCTCCATAGGAGAGTCCACTCACTGGAGCCAGAAACCTGCTCCGACTTCAGATACCAGCCCTTGGTCTCAGCCTGAGGCTGTGGATGTGGAACTCACGGCCTATGTATTACTGACCTTGCTTAGCAAAGATGACCTGACTCAAAAGGAGCTAGGCAAGGCCACCAGCATAGTGGCTTGGTTGACCAAG
Seq C2 exon
CAGCAAAATGCATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(32.3=100),PF076789=A2M_comp=PU(10.3=5.5)
A:
NA
C2:
PF076789=A2M_comp=FE(3.0=100),PF076789=A2M_comp=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]