HsaINT0000078 @ hg38
Intron Retention
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr12:8861135-8864008:+
Coord C1 exon
chr12:8861135-8861297
Coord A exon
chr12:8861298-8863793
Coord C2 exon
chr12:8863794-8864008
Length
2496 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTATGTTTCTTTTTCCATAGGAG
3' ss Score
10.83
Exon sequences
Seq C1 exon
GACCCAATGGTGAGTCAGGGTCTACGGTGTCTCAAGAATTCGGCCACCTCCACGACCAACCTCTACACACAGGCCCTGTTGGCTTACATTTTCTCCCTGGCTGGGGAAATGGACATCAGAAACATTCTCCTTAAACAGTTAGATCAACAGGCTATCATCTCAG
Seq A exon
GTATGTTGGTCCTGTTGAGAGTTCTTTGAAATTGTGAACATAAGCTGTGAGTTATCTATAATCTCCCTAGTAACCTCTGTCCCACACATGTACTCTAGGATTCATTTTAGTAACAGTTATTAAGTCATCAAATTATTGTTGGGAGGTTTGTGAGAAACACACGCAAGTGCTCAAAGGGCATTTTTATACTTTTTTTTCTTTTCTTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTCCAAGTTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCGAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGTATTACAGGCATGAGCCACCACGCCCGAGTTTCTCTCTTCTTGCCCAAGCTGGAGTGCAATGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGATCAAGCAACTCTCCTGCCTCAGCCTCCCGAGTAGATGGGATTACAGGTGTGTGCCATCATGCACAGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCGCCCTGTTGACCAGGGTGGTCTCGAATTCTTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCACATTTTTATACTTTTAATGTGAAGAGAAACTACATTGAAGAAGCTAGTCGGAAAATATATTGGCATTGTGGAATCACCCTTTTGGAGATCTTTGAAAGTGCTTTGATGTAGGACCACTTTAAATATTTTTTAAATTTTTTATTTTACTTTTTATTTTTTTGAGACGGTGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTTTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCCGCCACCACACTGGCTAATCTTTGTATTTTTAGTAGAGAGGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAGAATCCTGACCTCAAGTGATCCGCCCCTCTTGGTCTTCCAAAGTGCTGAATTACAAGCGTGAGCCATTGCACCTGGCCTGGACCACTTTAAATATATTTAGAATACTATTTGAAGTATGACAGATCTTGTAAATAAAATTTTAATGCATTTCATTTATCTGGCTGTGTATTTAAAATTATTCTTCCAGGCAGAAGTGCAGTCTCAGCCTTCATTTATATGAGCGTCATGGCTGAGCTGTCCTCTCACAGGGGGTCAGGTAGTTTTTTCTCTTGTGTCTAAGCAACTCCAGTCATGAAATGTGTGTCCGAGACAATGGGTTAAATACACCTGTTCCACCGTGTATTGGTTTATTGTGATGATCTCTTTTCCATTATCTTGTATTGCAAGCTCACGTTTCCTGTTACGTTCTTCCAATTAGATTGCCCTTCTGTGGTTACTTATTATCTCTAAAATTCTGTTTAATTAGTCTTCTAACGTACAGTCTTCTCATTTCTTATTTATTTTTCTTCAAGTTATCCATTATCTGTCATCTTGGCTGTCACAGAGGTTTCTTTTGGTCTCATTCTATTGGACTGCCTTCTAAGCATGTTTCATATAGTTGGCCTCATTAGCATTTCTTCATGGTTTCTCAGAATTCTTTCATATACTCTGCCATTTTTATTCTACTTAAAATGTTAAATCTTTTTTTTTTTTTTGAGACTGGGTTTCGCTCTTGTTTTGTTGCCCAGGTTGGAGTGCATTGGCGTGATCTCAGTTCACCGCAACCTCCACCTCCCGGGTTCAAATGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTAGAGGCACGCGCCACCACGCCTGGCTAATTTTGTATTTTTAGTAGAGTTAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGATTACAGGTGTGAGCCACCGCACCCGGCCTAAATCTTTGATTAAATGAAATAAATGCTGAAAAATTCATAAAACTGTAAGCAAACAAAAATTGCCCCCAAACACAGAGATTCTTATAAGAAGCTTCTATTTACCTATTTCCATTAGCATCAAAACTGATAAATTAACAAGGGTGGTTTTCATGTAATTGCTGGAGGCAGGAACATTTATCGATGCTTCTAGCTTTACACACAGGCACGCACATGCATCCTTGCATTTACATCAAGGTCAATTAATCAGCTAAATCTAAGAAATTTTTTTTCTACTCTGTTTAATTCTCAGTTGGTACTTACTCTGCTCTAAGATGCTGCATTTACAAAGTGAATGTGGGAAAGCCAGTTCCTTCTAAGGACATCCTAGTTATGTTTCTTTTTCCATAG
Seq C2 exon
GAGAATCCATTTACTGGAGCCAGAAACCTACTCCATCATCGAACGCCAGCCCTTGGTCTGAGCCTGCGGCTGTAGATGTGGAACTCACAGCATATGCATTGTTGGCCCAGCTTACCAAGCCCAGCCTGACTCAAAAGGAGATAGCGAAGGCCACTAGCATAGTGGCTTGGTTGGCCAAGCAACACAATGCATATGGGGGCTTCTCTTCTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535:ENST00000299698:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.0=100)
A:
NA
C2:
PF076789=A2M_comp=FE(28.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development