BtaINT0010533 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101342816-101344031:+
Coord C1 exon
chr5:101342816-101342906
Coord A exon
chr5:101342907-101343965
Coord C2 exon
chr5:101343966-101344031
Length
1059 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
AATGTCTTAATTTTCTTCAGCTA
3' ss Score
7.57
Exon sequences
Seq C1 exon
TTATATTGGAAGCCGTCCAGCCTCCAATATGGCAATTGTTGACGTGAAGATGGTATCTGGCTTCATTCCCTTGAAACCAACAGTGAAAATG
Seq A exon
GTAGGTTTACAATAAGCCAAGGAGACTCTATTTTATTTAATGTTTTATATATCTCTAGACTAAGACATTAATATAAAATACTATTAAATCAACTCCTACCAAAGACATTACTTTCACCAAATGCAGAAATATAATTTAGTATGTTTGTATGGGGAGTTGTTTGTTTTCCCATTAAACTTTGCTTTAATGGGTCTCAAAATTTTGTGATGGATTTTTTGGTCACATTTCCATTAAGATATTAATTTGAAATATTAATTTTAAGTACTAATAACCCAAAACTGCCACCCATGAAAAACAAATGGTCTGTAAAACTTTCTCCTTTTCTTCTAGTTTTATGAAGCATTGTTATCATTAACTAGTCTTTCACTACTAACTTCAGTGGTCAACTCAGACAATTTTGAGACTGTTCTTCCACCATGGATCATACTGGGGTGGCAGCTATTAGGGATCATATTAATTTAGTCTTCTGAGCTTCCTGGGCAGACCTGGATGCTGGATGCCAGCTCCAGCATCCTTCCTGTCCACTGCTTTAGTGACACAGCAGCAGTCTGTCTCCTGTCATGAACAGCACTATGGTAGGAGCCCCATCTACTAGGAAAAAAAGTGTTGGCAGGCTCTTACTTTAACAGAGCTTAGAATCTTCAGAAAATAAAGCATAAGCACATGAACCAGTGAAAAAATATGAAAAAGATTAACAAAGTAGAACTATTGCAGAAGTACAGAGAAAACTGAGAATAAGAAAAAGTAAAGAAAAAAAAAAGCCTCCATAAAGGAATGGAATGTGAATTGAACCTTGAGATATGGGTAATTTCTAAGCTTTTTTGTTCCCTGTTCCTCAAATAAATCAACTTTATACATAGGTCCTGTATCATACTAATATTAAACCCTGCATCCCAATTACCTTTCCTCTTTAATTTTGCCACATTATTGTCTTTGCTTATAAAAAGCATTTCAAGAAATTTCACCCTCAGGCTTAGTTTGGTAATAAACATTCTTTTATCTGGTTCCCCAGGGTTTTCATCTGTTTATTAACATTTACAATGTCTTAATTTTCTTCAG
Seq C2 exon
CTAGAAAGATCTAACGTGAGCCGAACAGAAGTTAGCAACAACCATGTTTTGATTTATCTGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137:ENSBTAT00000006167:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(25.3=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]