GgaINT0103710 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79364356-79365303:+
Coord C1 exon
chr1:79364356-79364446
Coord A exon
chr1:79364447-79365234
Coord C2 exon
chr1:79365235-79365303
Length
788 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ATTTGGTCTTCTTTCTTCAGCTG
3' ss Score
8.98
Exon sequences
Seq C1 exon
TTACACGGGTGAGCGCAGTGTCTCCAACATGGTGATTATCGATGTGAAAATGCTGTCGGGATTCATCCCTGTCAAGTCCTCAGTGAGGAAG
Seq A exon
GTAGGAGCCCATGTGAACCGTTTGTCTGAGGATATCTGCCCCTTTCATTTTATCACCGGAACCACATTCAGTTTCTCCTTTATTTTTAAGACATCTTGCAAGTGTCTGTGGCTTACTAGGGGGCTGTAGGATTGGCATCATCTTGATCCTGCCATTGTCATCTACACGCACAGTGTGTGGACAGTACTTTTCCTTTCACACCTGGCTGGAGGCCAGTACTACGTGATCAATCTGTGTAAAACAGACTATGTCTTTTTTTTTTTTTTCTTTTCTTTGGACAGGTGATGGGTTATCTCTGAGTTCAGATACCTTGCTGAAAACACTGTCCGTGTGTATCACATTCAGAAGCAATAGTGGTTTCTTTTTCCTTCTGCTGGTCTTACCCTATAGCTTATAGCTTGTCCTGTAATTGTTTAAGCCTCAGGTCCCTTTTTGAGATGCTGAGCAAGTGTGTGTTGCCCTGGAAAAGAGCAGAGATTATAAGATACTGCATAACTAGCCAGCCTGAAAGAATGTATTGTCATTGAATCCTCCCGTTGCTGTGTTTGGACCAGTGATCAGTCCCTGCTGGAGCTGCATAGTACTTAATCTGCCAGGCTGGTGAAGGGAAGACCTGGAGACCATTAATGCCTAATGGTGCACCAAGGAGTCAGTTCCACAACACAGACCTAGCCATTGCTGTCAGTACTCCTAGTGCTTTATCCACAGTGTGTGCCATCCATAGGGCTGTGAAAACGGCACAGGAAGACTACCCTCAATTCAATAACAATTTGGTCTTCTTTCTTCAG
Seq C2 exon
CTGGCACACCACCAAGTTATTGAGCGTACGGAGTTCAGTACCAACCATGTCTTAGTGTATGTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(25.0=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]