BtaINT0010547 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101526080-101526820:-
Coord C1 exon
chr5:101526760-101526820
Coord A exon
chr5:101526226-101526759
Coord C2 exon
chr5:101526080-101526225
Length
534 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GATCCCCTCTTCTCTTTCAGGAC
3' ss Score
12.97
Exon sequences
Seq C1 exon
TTAATAGGGAAAGGAAATTTGGAGATGGAGGGGCAGAAACACCTGAAGTCCAGGATGAAAG
Seq A exon
GTGAGTGTTCATGAATCTCTTGGGAGACTTAAACTTTAACTTTCCAGTTGAATTGGTTTATAATGCTTTTCAGATCTCCTTTGTGGTAGTTTCCTTCTACTTTTTTGTATATTCATTCTATTAATTTTTGAGAGTTTGATATTGAAACTCCAACTGAAAATCTTCATTTATCTACTTAAAAATACTTGCAATATATAGTGGAACTACATGTAACTTCATTCTGTGTTTTCCAAGTCTCCTGTAAATTTACATTACATTTGTAATGTAAAATTGTTTTTACATTAATTCAACAAACAAAAAAGAAAGAAAGAAAAAAAAAGAGAGACAAGAAAAAACTTTAAACTTCTAGAAAACAGTTCTTATACTAGAAGCAAGAGCAGGAGTAGCAAGAACAGAACAATAACCACAGATCAGAAAAATGAGGAACAACTTGCCCGTGGCTGGCTCAGGGAGAAGTGCAGACACAGGTTGGATGTCATTGGTACACATAAGAGCGTGTACTCTTATGCCTGAAGATCCCCTCTTCTCTTTCAG
Seq C2 exon
GACTGAAAGGCTCCTTCTCTCTCCCACTGGTCTTCAACTCTAGATTAGCCCCTGATCCTTCCCTGGTGGTCTACGCTGTTTTTCCCAATGGAGGTGTCATAGCAGACAAAATCCAGTTCTCAGTGGAGATGTGCTTTGACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(13.4=100)
A:
NA
C2:
PF077039=A2M_N_2=FE(32.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATAGGGAAAGGAAATTTGGAGATG
R:
CTGATTGTCAAAGCACATCTCCAC
Band lengths:
206-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]