GgaINT1005017 @ galGal4
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75543630-75544621:+
Coord C1 exon
chr1:75543630-75543693
Coord A exon
chr1:75543694-75544475
Coord C2 exon
chr1:75544476-75544621
Length
782 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TCCCTCTCTCCTCCATCTAGTGC
3' ss Score
9.66
Exon sequences
Seq C1 exon
GTCACAGGGAAAAGTGGAATAGTCCATGCAGGTCAGAAAACTGTTTGGGTTGGGCTGCCAAGAA
Seq A exon
GTAAGTGCACTCCCCTGTTATATGTCTAGTAAACATTCAATGTTCTGTGGCGTCCATTTCTATCTGGACATGTGGTATAAGCCTCTCTGCAATTTAGAGCTTGCTCATCCTTCTTCTGTCATGTCCACACAGCTTGTATCTCTAGCTTTCACATTTCCCTTTTGTTTGGTGCGAAGAGAACAATCCTCAACATCACTTGACCTGCAGGCTCATATGCTGTTGCCTTCATTTTCAAAGAAGTCTCCCTTTATTGACCTTTCAAAGGGCATGAAAATATAACTTTTCCCTCTATCAAAACTCTCTTGCTTTGTGTTGCAATTATGCCTACAAATAACCTTTGAGTAGGTAGGATGCCACATCTTATCATTGTGATGGTTGTTGACTGTTGATTGACTGTTGTTTTTTATCTTTAACATAGTTATAATCTAAATTATATGTGTTTTGAGGCAAATACAACCTCTTTGATGATAAGATGGGAGATATTTTGTGATGGGAGGCTTTGAAAGATACCTGAGACTCTCATTCTTTGTATAGCTAATCTTGAACTCCAAATAATTATTTCATCTCCTTAAGGCAATAAACAGAACCAGTACATCTTTTGCAGGTCTTGAATACTAGATCTAGAGATGTGCTAATTGGTTTCAGTGGTCTTCAGAAATCTCTGTGGTCCTGAAATAGCTGAGGAAAGGAATTAAACAGACATGTACAGAAGGACAAAAGCTGATCAGAGTCCCTTTCCATTACTGAATTTACTTCTCTTGTTCCCTCTCTCCTCCATCTAG
Seq C2 exon
TGCTGAAAGGCTTCTTCTCCATCCCTGTTACCTTCAGCTCAGTCTATGCTCCAACTTCAACACTTATTGTTTATGTTATCTTCCCTAATGGGAAAACCATCGCAGATTCTGCTGTCTTCAGTGTCTCTATGTGTTTCAGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000037222:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(13.9=100)
A:
NA
C2:
PF077039=A2M_N_2=FE(31.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGGGAAAAGTGGAATAGTCC
R:
TTTCTGAAACACATAGAGACACTGA
Band lengths:
206-988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]