GgaEX0027909 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75543001-75544621:+
Coord C1 exon
chr1:75543001-75543231
Coord A exon
chr1:75543630-75543693
Coord C2 exon
chr1:75544476-75544621
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTATTCTTTCTTAGGTC
3' ss Score
11.81
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCAAGTGTCCTGCATCAAGATATGGATAGAGAGCCAGGGACAGTTGATTTGAATTACATGAGAGCCTCTCATTTCATACGTCCATTCTACAGCACCAGCAGGAGTTTTCTCAGTATTGTCCATGTGCCAGAAATGATGCCCTGTGGTAAAAAGCAGGCTATCCAGGTGGACTTCAGAATTTACCAGGAAGACCTGGAACATGGGCCCAAGCGTGTAATTTTCTCCTACCTT
Seq A exon
GTCACAGGGAAAAGTGGAATAGTCCATGCAGGTCAGAAAACTGTTTGGGTTGGGCTGCCAAGAA
Seq C2 exon
TGCTGAAAGGCTTCTTCTCCATCCCTGTTACCTTCAGCTCAGTCTATGCTCCAACTTCAACACTTATTGTTTATGTTATCTTCCCTAATGGGAAAACCATCGCAGATTCTGCTGTCTTCAGTGTCTCTATGTGTTTCAGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'22-16,'22-15,25-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(26.5=51.9)
A:
PF077039=A2M_N_2=FE(13.9=100)
C2:
PF077039=A2M_N_2=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAAATGATGCCCTGTG
R:
ACAGGGATGGAGAAGAAGCCT
Band lengths:
135-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]