GgaEX0027909 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79184288-79186994:+
Coord C1 exon
chr1:79184288-79185014
Coord A exon
chr1:79185374-79186066
Coord C2 exon
chr1:79186849-79186994
Length
693 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCTCTCTTACCAGGCA
3' ss Score
11.92
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAGACCTTCATTTGCCAAATAAACCTTGAGTAGTAGCAGCTATGGGGGCACGCACTGAGGGATGTAAACCCAAGCACTGGGAATTTCAGCAGCCAGGAGGCCTTTTGCAATGACGGGGTAAAGAGTATTGGGATTTTGTCTGTGCCTAAATGGCACAGATGAATCAACAGGGTAGTATATGTGATAATGGGAGGTTACTGGTAGCAGAGTTGTTAGGGACTGGAAGGGTGACCTTGCTGTTAAATACTGCATAAATACTGCTACTGGCTTGGAGGAGATTCTGTCCACTGAACAGTCTTCTATGCTTCTATGACTCACCATGGTATTCTCAGATCAAAGTCATTGACTACAAAGGCAAGATGCTGAAGTACAAAAAAGTCCTCCTTGTAGTAAGTTTTGGTGAGCAGCAGTTTCAGCAAAAGTACCTCACTGGGGACACTGGAACAGCTTCGTTTAGCCTAAACACAACTGCTTGGAACAGCACCTCAGTCTCCCTGGAG
Seq A exon
GCAAGTGTCCTGCATCAAGATATGGATAGAGAGCCAGGGACAGTTGATTTGAATTACATGAGAGCCTCTCATTTCATACGTCCATTCTACAGCACCAGCAGGAGTTTTCTCAGTATTGTCCATGTGCCAGAAATGATGCCCTGTGGTAAAAAGCAGGCTATCCAGGTGGACTTCAGAATTTACCAGGAAGACCTGGAACATGGGCCCAAGCGTGTAATTTTCTCCTACCTTGTGAGTTTTTGGAGAAGTGCTGGTAGTGATGTCTCAAGACACAATATCAGAATCCTCCACAGGTTCAACCTTGATACTGCATAGCTTTGGCTTGGCACTTTGCCAGGTAGCTCATCTAGCCATTATGGGGCTGGATCCTGGTTTTAATTCCGGGACTGCAGTAGCAGCATGAAAGGCAGCACCTTTATTTTGGGCTCTGCACAGATGCAGGACAGGTATTGACCATATCTATCCTCCAGCAAATCCCTTGAACTTTTCATGTTACCTGAGTGTGAGTAAAGCTCCTATTGCCCTTACATACCCTATTTAACCTCCAGTCTCGGGAATACACTGGTCTGCATAGTGGTCTCAAAGACTACATGACTGGCATTCCCTTCTCTTTTTGTATTCTTTCTTAGGTCACAGGGAAAAGTGGAATAGTCCATGCAGGTCAGAAAACTGTTTGGGTTGGGCTGCCAAGAA
Seq C2 exon
TGCTGAAAGGCTTCTTCTCCATCCCTGTTACCTTCAGCTCAGTCTATGCTCCAACTTCAACACTTATTGTTTATGTTATCTTCCCTAATGGGAAAACCATCGCAGATTCTGCTGTCTTCAGTGTCTCTATGTGTTTCAGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-8/25=7-9
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(26.5=51.9)
C2:
PF077039=A2M_N_2=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAGGTTACTGGTAGCAGA
R:
ACAGGGATGGAGAAGAAGCCT
Band lengths:
342-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]