BtaEX6024152 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101526760-101531588:-
Coord C1 exon
chr5:101531421-101531588
Coord A exon
chr5:101529507-101529731
Coord C2 exon
chr5:101526760-101526820
Length
225 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTTTCTCAGGGA
3' ss Score
12.51
5' ss Seq
TATGTGAGA
5' ss Score
1.04
Exon sequences
Seq C1 exon
ATAAGAGTTAAGGGCCACGATGGCTCCCTCCTCAAGCATCATTCAGTGTATCTGGTGATTCATGGAGAAAATGGAGACATCAACCAGATCCTAACTACTGACAACAATGGCCTCGCTGCCTTCAATCTAGACACGGCTAATTGGAACGGGAAAAGTGTTTCTCTGGAG
Seq A exon
GGAAGGTTCCAGTTGGTAGAAACACATGATCCAAAGCAAGTGCCTCGTTACTACCAAAATGCCTACCTGCACCTGCAGCCCTTCTACAACCCGACTCGCAGCTTCCTTGGCATCCGTCGACTGAGTGGCATCTTGGAATGTGGCCGGCCCCAGGAAGTGCTGGTGGATTACCACATCGATCCGGCTGATGCAAAGCCTGACCAGGAAATCACCTTCTCCTACTAT
Seq C2 exon
TTAATAGGGAAAGGAAATTTGGAGATGGAGGGGCAGAAACACCTGAAGTCCAGGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(26.2=52.0)
C2:
PF077039=A2M_N_2=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGAGTTAAGGGCCACGATGG
R:
TGGACTTCAGGTGTTTCTGCC
Band lengths:
220-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]