Special

GgaEX1066271 @ galGal4

Exon Skipping

Gene
NA
Description
NA
Coordinates
chr1:75542475-75543693:+
Coord C1 exon
chr1:75542475-75542642
Coord A exon
chr1:75543001-75543231
Coord C2 exon
chr1:75543630-75543693
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCTCTCTTACCAGGCA
3' ss Score
11.92
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATCAAAGTCATTGACTACAAAGGCAAGATGCTGAAGTACAAAAAAGTCCTCCTTGTAGTAAGTTTTGGTGAGCAGCAGTTTCAGCAAAAGTACCTCACTGGGGACACTGGAACAGCTTCGTTTAGCCTAAACACAACTGCTTGGAACAGCACCTCAGTCTCCCTGGAG
Seq A exon
GCAAGTGTCCTGCATCAAGATATGGATAGAGAGCCAGGGACAGTTGATTTGAATTACATGAGAGCCTCTCATTTCATACGTCCATTCTACAGCACCAGCAGGAGTTTTCTCAGTATTGTCCATGTGCCAGAAATGATGCCCTGTGGTAAAAAGCAGGCTATCCAGGTGGACTTCAGAATTTACCAGGAAGACCTGGAACATGGGCCCAAGCGTGTAATTTTCTCCTACCTT
Seq C2 exon
GTCACAGGGAAAAGTGGAATAGTCCATGCAGGTCAGAAAACTGTTTGGGTTGGGCTGCCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX2-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGTCATTGACTACAAAGGCA
R:
AGCCCAACCCAAACAGTTTTCT
Band lengths:
223-454
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]