GgaEX1005202 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79186003-79188914:+
Coord C1 exon
chr1:79186003-79186066
Coord A exon
chr1:79186849-79186994
Coord C2 exon
chr1:79188765-79188914
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCTCCTCCATCTAGTGC
3' ss Score
9.66
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTCACAGGGAAAAGTGGAATAGTCCATGCAGGTCAGAAAACTGTTTGGGTTGGGCTGCCAAGAA
Seq A exon
TGCTGAAAGGCTTCTTCTCCATCCCTGTTACCTTCAGCTCAGTCTATGCTCCAACTTCAACACTTATTGTTTATGTTATCTTCCCTAATGGGAAAACCATCGCAGATTCTGCTGTCTTCAGTGTCTCTATGTGTTTCAGAAATAAG
Seq C2 exon
GCAGAGCTGAGCTTCTCAGTGCCCAAGATTCTTCCTGGTTCAGAGGTTAATCTCCACCTGCAGGCAGCACCTGGGTCTACATGTGCTGTCTGGGCTGTGGATCAGACTGTCTTTTTGCTGAAGCCAGAAAAAGAGCTCAGCCACTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'13-15,'13-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(13.9=100)
A:
PF077039=A2M_N_2=FE(31.8=100)
C2:
PF077039=A2M_N_2=PD(45.3=78.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGGGAAAAGTGGAATAGTCC
R:
AGAGTGGCTGAGCTCTTTTTCTG
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]