GgaEX1005202 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75543630-75546541:+
Coord C1 exon
chr1:75543630-75543693
Coord A exon
chr1:75544476-75544621
Coord C2 exon
chr1:75546392-75546541
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCTCCTCCATCTAGTGC
3' ss Score
9.66
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTCACAGGGAAAAGTGGAATAGTCCATGCAGGTCAGAAAACTGTTTGGGTTGGGCTGCCAAGAA
Seq A exon
TGCTGAAAGGCTTCTTCTCCATCCCTGTTACCTTCAGCTCAGTCTATGCTCCAACTTCAACACTTATTGTTTATGTTATCTTCCCTAATGGGAAAACCATCGCAGATTCTGCTGTCTTCAGTGTCTCTATGTGTTTCAGAAATAAG
Seq C2 exon
GCAGAGCTGAGCTTCTCAGTGCCCAAGATTCTTCCTGGTTCAGAGGTTAATCTCCACCTGCAGGCAGCACCTGGGTCTACATGTGCTGTCTGGGCTGTGGATCAGACTGTCTTTTTGCTGAAGCCAGAAAAAGAGCTCAGCCACTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(13.9=100)
A:
PF077039=A2M_N_2=FE(31.8=100)
C2:
PF077039=A2M_N_2=PD(25.8=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGGGAAAAGTGGAATAGTCC
R:
AGAGTGGCTGAGCTCTTTTTCTG
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]