MmuEX1013859 @ mm10
Exon Skipping
Gene
ENSMUSG00000108022 | Gm7298
Description
predicted gene 7298 [Source:MGI Symbol;Acc:MGI:3648717]
Coordinates
chr6:121765319-121769738:+
Coord C1 exon
chr6:121765319-121765382
Coord A exon
chr6:121767553-121767701
Coord C2 exon
chr6:121769589-121769738
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCCATTCCCCCCAGCTC
3' ss Score
10.03
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GTCATGGCCCAGGGCAGCATCATCCAGACTGGAAACCACACTCACCAGGTGGAGCCAGGAGAAG
Seq A exon
CTCCAGTAAAAGGCAATTTTGCCTTGGAGATTCCTGTGGAGTTCAGCATGGTCCCCTTGGCTAAAATGCTCATCTACACCATCTTGCCTGATGGAGAAGTGATTGCAGATTCTGTAAACTTTGAAATTGAAAAGTGTCTTCGCAACAAA
Seq C2 exon
GTGGACCTGAGCTTCAGCTCATCTCAAAGTCTTCCCGCCTCACAAACCCGTCTGCAGGTCACAGCTTCTCCTCAGTCCCTCTGTGGCCTGAGAGCTGTGGACCAGAGTGTGCTGCTCCTGAAGCCCGAGGCTGAGCTCTCCCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000108022_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(13.9=100)
A:
PF077039=A2M_N_2=FE(32.5=100)
C2:
PF077039=A2M_N_2=PD(25.8=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGCATCATCCAGACT
R:
CCAGGAAGGGGAGAGCTCAG
Band lengths:
204-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types