GgaINT1005016 @ galGal4
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75543001-75543693:+
Coord C1 exon
chr1:75543001-75543231
Coord A exon
chr1:75543232-75543629
Coord C2 exon
chr1:75543630-75543693
Length
398 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
CTTTTTGTATTCTTTCTTAGGTC
3' ss Score
11.81
Exon sequences
Seq C1 exon
GCAAGTGTCCTGCATCAAGATATGGATAGAGAGCCAGGGACAGTTGATTTGAATTACATGAGAGCCTCTCATTTCATACGTCCATTCTACAGCACCAGCAGGAGTTTTCTCAGTATTGTCCATGTGCCAGAAATGATGCCCTGTGGTAAAAAGCAGGCTATCCAGGTGGACTTCAGAATTTACCAGGAAGACCTGGAACATGGGCCCAAGCGTGTAATTTTCTCCTACCTT
Seq A exon
GTGAGTTTTTGGAGAAGTGCTGGTAGTGATGTCTCAAGACACAATATCAGAATCCTCCACAGGTTCAACCTTGATACTGCATAGCTTTGGCTTGGCACTTTGCCAGGTAGCTCATCTAGCCATTATGGGGCTGGATCCTGGTTTTAATTCCGGGACTGCAGTAGCAGCATGAAAGGCAGCACCTTTATTTTGGGCTCTGCACAGATGCAGGACAGGTATTGACCATATCTATCCTCCAGCAAATCCCTTGAACTTTTCATGTTACCTGAGTGTGAGTAAAGCTCCTATTGCCCTTACATACCCTATTTAACCTCCAGTCTCGGGAATACACTGGTCTGCATAGTGGTCTCAAAGACTACATGACTGGCATTCCCTTCTCTTTTTGTATTCTTTCTTAG
Seq C2 exon
GTCACAGGGAAAAGTGGAATAGTCCATGCAGGTCAGAAAACTGTTTGGGTTGGGCTGCCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000037222:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(26.5=51.9)
A:
NA
C2:
PF077039=A2M_N_2=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGTCCTGCATCAAGAT
R:
AGCCCAACCCAAACAGTTTTCT
Band lengths:
287-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]