HsaINT0000061 @ hg19
Intron Retention
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:23336]
Coordinates
chr12:8995730-8998098:+
Coord C1 exon
chr12:8995730-8995957
Coord A exon
chr12:8995958-8998037
Coord C2 exon
chr12:8998038-8998098
Length
2080 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGA
5' ss Score
1.04
3' ss Seq
TCTTTTCTTTTCTTCTTTAGTTA
3' ss Score
10.03
Exon sequences
Seq C1 exon
GGAAAGTTTCAAATGGAAGACTTAGTATATAATCCGGAACAAGTGCCACGTTACTACCAAAATGCCTACCTGCACCTGCGACCCTTCTACAGCACAACCCGCAGCTTCCTTGGCATCCACCGGCTAAACGGCCCCTTGAAATGTGGCCAGCCCCAGGAAGTGCTGGTGGATTATTACATCGACCCGGCCGATGCAAGCCCTGACCAAGAGATCAGCTTCTCCTACTAT
Seq A exon
GTGAGACCGGGAAACGGGGACGGGTGAGAGTATGCTGGGAAGGAAAGAGAATGAGAAGAGTCAGCCAGAGGGTGCACCTAGGCTATCTGAATTGCAGATGCACATCTAATTAAAAACAATTTTAAAGCCACACTAAAAAAGTAAAAGAACAGTTGACATTAATTTTAAATGTATTTTTTATTTAACCCATTATATCCAAAATATTAACATTTTAACACGAAAGCCATATAAAAAGTTTTAATAGATATTTTACATTCTTGTTTCAACGGTGTCTTTGAAACTCAGTATGTATTTTACACTTAAAGCGTATCTCAGTTTGGACTGAGCACATTTCAAGTATTCAATATTCCTTTTTTTTTCTTTTTTTTTTTTTTTGAGACACAGTCTCGCTCAGTTGCCCAGGCTGGAGTGCAGTGGTGTGTTCTTGGCTCACTGCAAGCTCCACCTCCCAGGTTCACGCCATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAACTAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCTGCCTCAGTCTCCCAGAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTCAAGTATTCAATATTCCTATGTGGCTATGAGATACTGCATGGCCCAGTATAGGTGTAAGAGATGGAAAACATTGGGGGAAGAAAGAGATTCTGAGCAGGAACACAGGAAAATTGTGTGGGAAAATAAAATGAGGAATTACCTGAGAAAATAGTGCTGGCCAGGACCAAAAAAAACAAAAACAAAAACAAAACCAGCTGGGTGGTTGGGAGGGAGAGTGGGGAGGGATGGGACTCAGGATACTTTTTTTTTTTTTTTAATTTATATGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGACTGCAGGCATGAGCCACCGAGCCCAGCCAGGATACATTTCATTCTGTGTTCCATTGGTCAATATTATCAAATAGATGATATGGGGTTAAATTCACATCGATAGCAGCCTCATTGGGGAAATAAAATCATAACTTGGTAGCCTGAAAGCAATGTATAAGGATAAGCAGCTTTCCTGTCACCTTGGTGACAGTCAGGAAGTAGAATGGAAACCTCAGGTTTGATGGCTCGGAGCCTCTTTGTTCCGTTATCCTCCTGTCAGTCTATGAGAGACTTTCTCCCCTCTGGATCATTGCAGTAGCTTCCATGGTTTCAGTGTTGTCGTTAAGTGAAAAAAAAAAAATCATCCTAATACAACGAAAAGAGAAAAGATAGGTGGAAAATAACAAGTCCAGTGATAAAGCGGGCTCTGTCTTCAGGACCGAAGTGTGGGGAGGTGTAGGACAAAAGTGAAGTTAGGGCCGAGCCACGTGGAATGGCTAATGCTGGGCAGGCGTCCAAGGAACCGACCTTGGAGCCCTGCAGGAGCGTGGGATGAGAGCCTGCTTGCAAACAAGATCACCGAGTTCTGTTTCAAGTGAGAGTGGACGGGAAGGGGGAGTTAGAAGAGGAGATTTCTCCTCTAGAGGGTTCAATGTCAGAAGGGCTCAGGGTGGTTTAGGATGAAATTATTTCCACTGAATTTTAAATTGAGCTGTAATTAAAAAACACTTATGAGGATAGATTTTCGCTGACTTTCTGTTACAAAGATTATAAGAAAATAAAATTTGGAGATCTTCAAGAAATGGCAGACAGTTATCTATGGTGAGGAACAATTTCTATGCTGTCAGACTCCTCCCATCCACCTGCGTGGTTCTCAGCCAGACCTCCAACTGCAGGAGGAGCCACCAGGACCCGTTGGCAGCATCCTGCATTTGTCAAGCTAGTGGATGCTGGGTGAGGTATTGACCCGGACTCTGAACTGTGAAAGGAACCTCTCCTCATGAAGGGATGCAGAGATGCTCTGGAAGTTGGTCCAAGGTGAAATTACTGTAACTTCTGTGCAGTTGATTCTTTTCTTTTCTTCTTTAG
Seq C2 exon
TTAATAGGGAAAGGAAGTTTGGTGATGGAGGGGCAGAAACACCTGAACTCTAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535-A2ML1:NM_144670:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF106704=DUF4198=PD(3.1=2.6),PF077039=A2M_N_2=PU(26.2=51.3)
A:
NA
C2:
PF077039=A2M_N_2=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)