BtaINT0010554 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101543662-101544518:-
Coord C1 exon
chr5:101544335-101544518
Coord A exon
chr5:101543825-101544334
Coord C2 exon
chr5:101543662-101543824
Length
510 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTCTCCCCTGTCTTGGCCAGGTA
3' ss Score
9.26
Exon sequences
Seq C1 exon
AAACTATCTGGTGGCATTGCCAGCCCTTCTTAAGTTCCCCTCTACTCAGAGGGTTTGCTTGGATCTGAGTCCTGGGTACGACAATGTAAAATTCACTGTTACTCTGGAGACCAAGGGCAAGACTCACACATTGCTGCAACAGTTTGGGCTAAAGACGAGACACTTACACTGCTCGTCCTTTTTG
Seq A exon
GTAAGTACAGGCCTAGCCCAACTCTCGTCCTCAGTTTTCCTATTCTCCTCCCCGGATGCACTATAATTTGTCTTTAAGTATGTTTTTTGTTATCTTACTTTTTGCCATGGCTTCTAAACTCATCTCTCATCAACTTCAATTCCTGGCCATAACTTCTGATATTATTCTCTGGAAACATTTTTTTCTTTCTTTAAAAAAAATTTTTTTTTTTAATTACAGAAATGTATGATAACACATTTACAGGTGACTTGGAAAATACAGAACAAAGTTACATAGAGTTCCACTAAATATTACAATTATTTTTTTAAGTAGATAAATTAAGATTTTTACTTGGAGTTTTAATATCAGACTTCTGGCAACTTTTTCATGGCTCCAACCTTGCCACCTCCATCAACTCATTCCTTTCCTTTTACTCTCTTTCTCTTGAGTTAAGACTAGCTGGTTCTGTCCTTCCCCCACCACACCCCCAGTCTCCTGCTCCTCTCCAGAGCTCTCCCCTGTCTTGGCCAG
Seq C2 exon
GTACCACTTCCTTCTGGTGGCACAGAAGAAGTAGCCACCGTCCGGGTGAGAGGAATTGGACATAATGTCTACTTTGAGGAGAAGAAAAAGGTTCTGATTCAGAGGCAGCAGAATGGCATCTTTATACAAACTGACAAACCTGTCTACAGCCCAGGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0183514=A2M_N=PU(13.8=29.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGCCAGCCCTTCTTAAG
R:
CCTGGGCTGTAGACAGGTTTG
Band lengths:
326-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]