BtaINT0010566 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101502881-101503597:-
Coord C1 exon
chr5:101503382-101503597
Coord A exon
chr5:101503009-101503381
Coord C2 exon
chr5:101502881-101503008
Length
373 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTTGTTTCCTCCAACTAGACG
3' ss Score
8.56
Exon sequences
Seq C1 exon
GACACCGTGGTGGCTCTCCAAGCTCTCGCCAAGTATGCCACCACTGCCTACGTGCCGTCGGAGCAAGTCAACCTGGCAGTGAAATCCGCTCAGAATTTCCAGCACACCTTCAATGTTCAAGCTGCCAACCGTCTGGTGTTCCAGCAGGAGATGTTGCCCCATATCCCTGGGGTGTACACCTTGGAGGCCTCAGGCAAGGGCTGTATTTATGCGCAG
Seq A exon
GTAAGCAGAGCTCTGGGCTTCCCAGGTGGCTCAGTGGTAAACTATCCACCTGAAATGCAAGAGACACGGGTTCAATCCCTGGGTTGGGAAAATCCCTAGAAGAAGGGAATGGCAACCAACTTCAGTATTCTTGCCTGGAAAATCCCATGGACAGGGAAGCTTGGTGGGTGACAGTCCCTGGGGCCGCAGATCAGGCACAACTGAGAGACAAAGCTGAGCTCCAGCAGGATTAGTGTGAGTTGGGGAGGAGAGTCTGAGAGTATCTCAACCTCCAGCAGAATCTTCTCTATCTTATTTGCAAGGAAAACCATACAATCTTTAAAATTCTCCCCAACTCTGATTTCTCCAACTGTTTTTTGTTTCCTCCAACTAG
Seq C2 exon
ACGGTGCTGAGATATAATATCCTCCCTCCGAAAAGTCTGGAGGCCTTTAGTCTTAGTGTGAAAACAACGGGATCTCAGTGTAAGCAACATACTTCACTTGGATCCTTGGTGCTGACGATCCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(44.8=18.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGTGGTGGCTCTCCAA
R:
CTGGTTTGGATCGTCAGCACC
Band lengths:
342-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]