DreINT0137929 @ danRer10
Intron Retention
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21145214-21145643:-
Coord C1 exon
chr15:21145431-21145643
Coord A exon
chr15:21145336-21145430
Coord C2 exon
chr15:21145214-21145335
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
GTCTGTTTTGACTCTCTCAGATG
3' ss Score
8.74
Exon sequences
Seq C1 exon
GACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTGTACAGTCAGCAGGAGACTCTCACTACTTTAATGTCAATCAAGACAACAAGTTAGTCTACCAGGAGAAGCAGCTGGCCAATGTGCCGGGCAAATACAAAATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAG
Seq A exon
GTTTGTAGTTTCAGCTTCTCCTTTTCTTTGAATTTTGGGGCTATTCTGCTTTGAGATTTTCTTATGAATGTGTTTGTCTGTTTTGACTCTCTCAG
Seq C2 exon
ATGGCTCAGTTCTACAACATTCTCACTCCTAAAGAAGTTAAAACATTGAGCATTGATGTTAAGATTGAGGGAGACTGCAAGAAAACCTTTGGAAATAAACTATTGTTAGAATTCACTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315:ENSDART00000142311:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCAGGAGAAGCAGCTGG
R:
GGTTTTCTTGCAGTCTCCCTCA
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]