DreEX0067501 @ danRer10
Exon Skipping
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21144968-21145643:-
Coord C1 exon
chr15:21145431-21145643
Coord A exon
chr15:21145214-21145335
Coord C2 exon
chr15:21144968-21145056
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTTGACTCTCTCAGATG
3' ss Score
8.74
5' ss Seq
GAAGTACGA
5' ss Score
3.53
Exon sequences
Seq C1 exon
GACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTGTACAGTCAGCAGGAGACTCTCACTACTTTAATGTCAATCAAGACAACAAGTTAGTCTACCAGGAGAAGCAGCTGGCCAATGTGCCGGGCAAATACAAAATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAG
Seq A exon
ATGGCTCAGTTCTACAACATTCTCACTCCTAAAGAAGTTAAAACATTGAGCATTGATGTTAAGATTGAGGGAGACTGCAAGAAAACCTTTGGAAATAAACTATTGTTAGAATTCACTGTGAA
Seq C2 exon
TTATGATGGTCCTCATGAAACAACCAACATGTTGATTGTGGATGTTAAACTCTTATCTGGATTCACAGCTGATGATACAACAATGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315-'32-30,'32-29,33-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTTCAGGCTCTGTCTT
R:
ACATCCACAATCAACATGTTGGT
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]