GgaEX6003237 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79206756-79208045:+
Coord C1 exon
chr1:79206756-79206971
Coord A exon
chr1:79207442-79207566
Coord C2 exon
chr1:79207941-79208045
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTCTTTCTCTGCAGACA
3' ss Score
12.87
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATACGGTAGTTGCCCTGCAGGCCTTGGCTAAGTATGCAGCGCTGACACACAACACAAAAGGGGTTGCAGAAGTGAGAGTGAGGTCCCAGAGAGGCTCTGGGAGGAAGTTCCAAGTTTCCTACCACAATCGGCTTTTGGTGCAGGAGATGGCACTGAGAGAAATCCCAGGAAAGTTCTCAGTGCAGGCCCATGGCAGCTGTTGTGTCTTTACCCGG
Seq A exon
ACAGTGCTGAGATACAACATTCCCTTCCCTCAGGTTTCCAAGTCCTTTGCCTTACAAGTGAAAACCAAGCCAGACAATTGCACTGAGGACGATGCATACTCTGTTACTCTTTATGTCAATGTCAG
Seq C2 exon
GTACACTGGGAAGAGAGCCATTTCCAACATGGTGATTGTGGAAGTGTCCCTACTGTCTGGATTTGTCCTGGCTGCAAGATCTGGGATGTCTGTAAGAGGCCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'37-37,'37-35,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.3=18.1)
A:
PF076779=A2M_recep=PU(43.8=92.9)
C2:
PF076779=A2M_recep=PU(30.3=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTTGCAGAAGTGAGAGT
R:
GACATCCCAGATCTTGCAGCC
Band lengths:
247-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]