BtaEX6024167 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101502645-101503597:-
Coord C1 exon
chr5:101503382-101503597
Coord A exon
chr5:101502881-101503008
Coord C2 exon
chr5:101502645-101502735
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCCTCCAACTAGACG
3' ss Score
8.56
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACACCGTGGTGGCTCTCCAAGCTCTCGCCAAGTATGCCACCACTGCCTACGTGCCGTCGGAGCAAGTCAACCTGGCAGTGAAATCCGCTCAGAATTTCCAGCACACCTTCAATGTTCAAGCTGCCAACCGTCTGGTGTTCCAGCAGGAGATGTTGCCCCATATCCCTGGGGTGTACACCTTGGAGGCCTCAGGCAAGGGCTGTATTTATGCGCAG
Seq A exon
ACGGTGCTGAGATATAATATCCTCCCTCCGAAAAGTCTGGAGGCCTTTAGTCTTAGTGTGAAAACAACGGGATCTCAGTGTAAGCAACATACTTCACTTGGATCCTTGGTGCTGACGATCCAAACCAG
Seq C2 exon
TTATGTGGGGAGTCGCAGCTCTTCCAATATGGCTATTGTGGAGGTCAAGATGCTTTCTGGATTCAGTCCTGTGGAGGGCACCAATCAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(44.8=18.1)
A:
NO
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTCAACCTGGCAGTGAA
R:
AACTGATTGGTGCCCTCCACA
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]