BtaINT0010574 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101535168-101536072:-
Coord C1 exon
chr5:101535988-101536072
Coord A exon
chr5:101535295-101535987
Coord C2 exon
chr5:101535168-101535294
Length
693 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CTCGTGTTTTTCTGGGTTAGGTA
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGCTGCCTAAGTTTAAAGTGGAAGTGGTGGAACCCAAAGAGTTATCAGTGGCGGAAGACTCTTTCTTAGTGAAAGTTTGTTGTAG
Seq A exon
GTAAGAATCAAGCTCTGGATCCATTGAGGATGAAAGCTATATTGAGAGATGTTGTGATCGAGTGTTACCAGGAGAGGATTGTGGAGGTAGTGGTTAAATCTTGTGATGTTTTATGTGGCTCAGAGTCACAAGTTCGGCAAAAACACACTTTTAAAAAAAACTGTTTCTTATGTGGACCATTTTTTAAAAAGTCTTTATTGACATTTGTTACAATATTGCTTCTATTTTATGTTTTGGTTTTTTGGCCATGAAGCATGTGGGATCTTAGTTCCTGGACCAGGGATTTAATCCGCATCCTCTGCATGGGAAAGTGAAGTCTTAACCACTGAACCACCAGGGAAATCCCAGGGACACATTATCTAACTGCATTTTTGTGCTTACTTGCCTCTGCTTTCTCAGCTGGCATTATTGGTTTAGAGTCTACTTTGTGCAGAGCACAGTATTGAATCCCATGGGAAGTAGGAGTAAGGAAAAAGAAAGACACTGTTGTCCTTTGGGTGGTATTTATTGTGCAATGGCAATACTCTAAAGCTTTGAGTAAAGCAGAGATGTGAATGAGAGCTGGAGAAAGGTGGGACTGTCAAAGCGCTTTCAGAGATGGGCATGCGGAAGAAAGGAAAATGTTTAGGGGAGGAGGGCCTGGATCACAGGTGGACTTGCCCCTCTCTGATTCCTCGTGTTTTTCTGGGTTAG
Seq C2 exon
GTACACCTATGGAAAGCCCATGCAAGGAGTAGCACACGTATCAGTGTGTCAAAAGCCATATACTTACCGGTATCCGGATCCAGAACGGGAACATTTACCTGACAGATGCAAGAAAGTCTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(18.1=72.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCTAAGTTTAAAGTGGAAGT
R:
CTGTCCAGAGACTTTCTTGCA
Band lengths:
212-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]