BtaINT0010854 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61988650-61989140:+
Coord C1 exon
chr19:61988650-61988817
Coord A exon
chr19:61988818-61989026
Coord C2 exon
chr19:61989027-61989140
Length
209 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TGTTAATCTTGTGTGGTCAGGTG
3' ss Score
6.77
Exon sequences
Seq C1 exon
CAAAAAGCCCAATCTCAGTTACGGATCTCAGGCCTCTGTCCTTCAGCATACTGGTGTGGACAGGCCCTGGTGGACATCCCATTTTATTTCGGAATTCTTGTTTCGATACATTTAATGTACTACATATTTTTGGAATCCACAATTGTACTACAATTCATGTTTGCTCTG
Seq A exon
GTAAGTGGTCATTTTCCCCCAAACTCCCCAAATATAATAATAGAATCAAAACAAAAAAATTCGTTTTCATTAACACTTTGTCCTTAACAAAAGGCATGTGCAAGAAAATTGCCTTTGACAGCTTTGGGATCTGGGATCCGATCCTCTGCCTGCCCCTCACCCTGTCCGTGACCCCGTCTCTAACCTTGCTGTTAATCTTGTGTGGTCAG
Seq C2 exon
GTGGTTTGCGTGGCCAGCTGTGCGGCGTGTCTCATACTCCTCACGTACGTGATTTCATTCCTCTTTCCCAGCGGAAGGAAAAATAACGGCTTTTGGTCCCTCAGCTTTTTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.4=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAAGCCCAATCTCAGTTACGG
R:
AAAGCTGAGGGACCAAAAGCC
Band lengths:
276-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development