BtaINT0010917 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003472 | ABCA12
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 12 (ABCA12), mRNA. [Source:RefSeq mRNA;Acc:NM_001191294]
Coordinates
chr2:103528839-103531081:-
Coord C1 exon
chr2:103530947-103531081
Coord A exon
chr2:103528943-103530946
Coord C2 exon
chr2:103528839-103528942
Length
2004 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TCTTGTAACTTTCTATTAAGGAT
3' ss Score
6.94
Exon sequences
Seq C1 exon
ACTGTTCAAAAACTCCTTGGGAGACTTCACCTGATGCCCTACAGGGACAAAGTTACCTCTATGTGTAGTTACGGCACAAAAAGAAAATTGTCTACTGCACTGGCCTTGATAGGGAAACCTTCCATTCTGTTGCTG
Seq A exon
GTAAGAGAATCATTGTGAAAAAGGCTACTGCCCAATTAGAATCACATATCCAATTGTGTATAACATTTCATTATCATTATTGCAATAAGCATTTACTGAGGTCTCATTAGGGGCTTTCCTGGTAGCTCAGCTGGTAAAGAATCCGCCTACAATGCAGGAGACCTCCACTTGATTCCTGGGTTGGGTATCACTATGGGCTGGTTCTTGTGTAAAGCACTTCACATATACTGTCTCATTAAGGAAATTTATACCAGGTAATTTGTTGCCATAATAATATGCCCTCAAAAATATTTTTTGTCTGAAGCTATGGCTCAGGTAATTTAAGAGGAAACATGGGAATAGGAAGTAGCTGGAACAAATTCAGGATATTCAGATAAGTAAGTAAAACTATGACAGAATTTGATTCCCAGTTATTGAAGGAATCAGTTCTATTGGTAACTGATCAGGTGAATTAACACATTTTCCAGCTTCCAACACATTGTCCTAAAATGTTATCTCCTTGTTGCTTAAAAACATGAGTTACCTAGCTTGAGATGCAATCTTGAAAATATGCCATTCTATTTTATCTGAATTTTTTGAAAGCAAGAAATACATGTCATGTTAATATTTTGATTAAAAGCTGAAAAATTAAATTGATCACCTGGAAATATAAGTTACCTTAGGGGTGACATAGCATTCTGTTCCCCAAGCCAAACCTTGTGAAAAGTGTTTATTTCAGAGAAATAAGCTGCCCTTATTTTGGAAGATCCCCTTCATTCAAGGACTTCCAAAACTTCAAAAGAGGCCTAACTATGCAATAAAATCACCAGTTATAAATCATCACATTATTTCAGGGATTAAATAATATAGAATATCAAATCATTTAAACTGCCCAGATAGAGTAATGCATAAGCCCTCTCTGTATAATACCGGAAGCATATAATGCATTATGTTTCTGCCAATTGACACTCATAATGGAATTCTATTGTATAAGTGTCCCTTAAATTTAAGAAAACAATCCTTAGGCACCCCTATGAGATAATAGATGTAAAGTACTTTAAAATGTTAAAAAGCTCTATGCAAATGTTATGCATTAATGAGCTGAATTGAAATCAGGCCATGAGAGAAAGACACTATATATTTTTTTTAATATATACTTACTATATATGCCATTGTCTTCAAAAATAGGAACAGTGACAATATAATCTTTACTGTTTCCCCAAACTAATACTTATTTCTTTCTTTAAATTCCAATTTAACCCCTTGCTATAAAAATAAGCCTCTGCTGATCCTATCTGCATACTTTCCATTTCAGACGTATATTTTTAATTTTTACTTAATCTTGACCTACAGTTTGATTTTTTAATCATCTGTCAGGATCTATTATTGCTTGTTTAGTTCTCCATTGCTACATTTCTAATTTTATGCCTGAATAATTTTTCAAAATGTCATTTACTTTAAAATGTAATTTATATCTTTCTATTTGGCATTTTCTGCAAATCTTACTTTTATTTCCCCAAGGAGTATTAAATTTCAATTAATAACATAAAACTGAAAATGCACTTCAATAATATTAACAAAAAAAATGCATTCTTAGCAGCAGCAGCAGTGCTTCACATGGCATATTATCTATCACTTACAGGCACAATTCTACCATCAGGAGCAAGGCAGCAATCTTGTTGATGTAGCTTCAGATATATATGTGATGATATAGTATTAAATATCAAAACTCTGGCTTTGTCAGTAATTGAAGCAGATTTTTTTCCAAAGAAATATAAGAGACATGTGTAAAGTAGCAGAGTGTCAACTTCACTGAGACTGTTTAAAACAGATTGACAATTTAAAATGATTAATTTTGAGCTTTTTGACAGCAGCAGAAAGAAGCCTGTTAAGTATAAAATAAGTTAGTCACAGGACCTCGAAAAGTGATTTCTGTTCTAGGCAAGTGAGATGCAATGATTCATGTAAAGAACCTCATCAAAATTTAATTAATTTGATAAATTTTTCTTGTAACTTTCTATTAAG
Seq C2 exon
GATGAGCCAAGCTCTGGGATGGATCCTAAGTCAAAACGGCACCTCTGGAAGATCATTTCAGAAGAAGTCCAGAATAAATGTTCTGTCATCCTCACTTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003472:ENSBTAT00000004518:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.1=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(2.7=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]