GgaINT0049256 @ galGal3
Intron Retention
Gene
ENSGALG00000003553 | E1C7T0_CHICK
Description
NA
Coordinates
chr7:4240483-4243128:-
Coord C1 exon
chr7:4242994-4243128
Coord A exon
chr7:4240587-4242993
Coord C2 exon
chr7:4240483-4240586
Length
2407 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
AATCCTGTCTTTCCTGATAGGAT
3' ss Score
10.54
Exon sequences
Seq C1 exon
ATCGTGCTCCAGCTTCTCCACAGGCTGAATCTGATGGCCTACAAAGACAGGATCACCTCTATGTGTAGTTATGGCACCAACAGAAAACTGTCAACTGCTCTGGCTCTCATTGGGAATCCATCTATTCTGCTGCTG
Seq A exon
GTGAGAAATGGGGGCCTTGTTGGGTGAAAGCTGAGCAGATCTCCAGGCAGGAGGGACACTTGAACAGTCTTTGTAGACACAGGCTGCAGGACACTCCCCAGATGTTCATACTGAATAAAGTAGCCTGACATCATGCGCATCAAAGGAAAGTTTAGATTCCAGCAAGCACATACAGATTTGATTTTCCAGCAGGGAGAGGGAGGTGATTGTCCCCCTCTACTCAGCTCTTGTGAGGCCCCATCTGCACTACTGTGTCCAGGCCTGGGGCCTCCAGTACAGGAACGACGTGGAGCTCTTGGAGTGGGTCCAGGGGGGGGCCACTAAGATTATGAGAGGGCTGGAGCACCTCTCCTTTGAGGAAAGGTTGAGGGAACTGGGCTTGTTTAGCTTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGTGTCCTTCCAGTACTTGAAGGGAGTGTATAAACAGGAGGGGGAACAGATGTTTATGAGGAGTTTATGGGAGTACCATTTTCTGTGTTAGAATCTTTCAGAGGTCAAAAGTAGATCTTCTGTTTGCCAGTTAAATTTTCCTCATTCCCAGCTCTTTCTTGATTTGGTGCATTGACTATCCTGCATAGTCTTGCAAAAAGAATTAGCAGCCAAGGCTGCCAGTAAATAGGAGACCAAAGGAGCAACTTTCAAGATCAGAACATAAAACTTTTTTTTTTCTAGATCTGGCTTCCCCGTTCTTCTTTCCCTTTGAACTTTTCAGTTCTTCCATGAGATACAGCATTGCTAAAATACACTTTTTTGTGAGTTTATCACTTGCTGTATTTTAAATGTGGAGAGCTGTGGGGTGCAGTTGACATGCCCAAGGGATGGAATGCCATCCAGAGGGACAGGTTGAGTAGTAGGCCTAGATGAACCTCATGAGGTTCAACAGATCAAAAGACAACAAGGTTTTGTACCTGGGTCATGGCAACCCCCGCTCTCAGTACATGCTGGGGGATGTAAGGATAGAGTGCAGCCTTGCCAAAAATGACTTGGGGTTTCTGGTGGATGGCAGCTAGACCTGAGCCAGCAATGTGCCCTCACAGCCCAAAGCGAGCCGTATCCTGGGCTGCATCAAAAGCAGTGTGGCCAGCAGGGTGAGGGAGGGGATCTGCCCCTCTGCTTTGTGCTGGTGAAACCTCAGTACAGGAGAGACATGGACTTATTGTAACGTGTCCAGAGGAGGCCACAAAAATGATCCCAGGGATGGAACACCTCTCCTCCAAGGACAGGCTGAGACAACTGGGGCTGTTCAGCATGGTAAGAGAAGGCTCTGGGGAGACCTGAGAGCATCCTGTCAGTGTCTGAAGGGGGGGCTACTGGCAAGAAGGGGACAGACTCTCTAGCAGAGTCTGCTTTGATAGGAAAAGGGGAAATGGTTTCAAACTTAAAGAGGGGAGGTTTAGGTTGGGTATAAGGAAAAAATCTTTTACAGGGAGGGTGGTGAGGCACTGGCACAGGTTGCCCAGAGAGGTGGTGGCAGCTGGACTAGATGACCTTCAAAGGTCCCTTCTTACTCGAAGGATTCTATGATTCTATTCAATGTTTCTAAATATGTTCAGTGCTCTAAGAGCAGTGTTAAATAGGATGCTTAGTTGAACATAAGCCTTCCTTGCTCCAACTTGTATCCAGCCCAGATGGTCTGTGGCCAGAAGTGACCACACCAGCCCTCTGATAACTTTTGTGACATGCAAAATCTCAATAAAAAGAAAAGGTGGGGAATTTTTCCCTGTACTGACTGCTGCATGAACCTAAGCTGTTTGTTTCTGCCTCATATAGTACAATACCCTTAAAAATAACAATCTGGCAATTGGAAACCAGCTAACAATTTTATCAGCAATGCATAAAGTAGAAGGCAATGTACTGTCTTTCATCTCTGGCTCATTTTCTTTATAAATGGAGGAATGGAGCACATGTTTTGTCAGGATATGAGAGAAGCAGAATGCAGATTCACCTAGGAATCAATTGCTTTTTGGTTGCTTCTTGTTGAAGATTATACTTCTGGTGTTTGTGGAAATATAAAGCACCAGGGTAGGGTTGATCTTAGGTGGTGTTATCAGAGCCACTCAGTTCTTATAAGGAATCCAGTGAGGTTGGGAGTTCCCACTGCAGTGACCAGGGAGCTGAACCGTTCCAAAAGGCAGCGAGGATGGATGTCTTTGGTTGACTTGCTTCTGCATGAGGGAAGCAAGTCTCAATCATACCCATTCAATAAAGCAATTCAGCATAATCCTTCTCCCTGATCTGTACCAGTGGCAGCTCACCTGGGGGTCCTTACTAGCAAATATAACCCTAATGATTAACATAAAAAGAGAACAAGAGGACAAGTATTAGGAAGATCAGCTTTTGAGTACAATATTACGTTCAATCCTGTCTTTCCTGATAG
Seq C2 exon
GATGAACCGAGCTCCGGAATGGATCCAAATGCTAAACGCCACCTTTGGAAAATCATCAGTGAGGAAGTGCAGAACAAATGCTCCGTGATACTCACATCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003553:ENSGALT00000005620:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(29.9=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(2.7=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]