BtaINT0010920 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003472 | ABCA12
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 12 (ABCA12), mRNA. [Source:RefSeq mRNA;Acc:NM_001191294]
Coordinates
chr2:103633707-103641969:-
Coord C1 exon
chr2:103641872-103641969
Coord A exon
chr2:103633886-103641871
Coord C2 exon
chr2:103633707-103633885
Length
7986 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGTGGTTTTATTTTTTTAAGCTA
3' ss Score
7.22
Exon sequences
Seq C1 exon
CCACAATATTTCCTAGTCTAAGTGCTGATCTGGAAAGTACTGGAACAGATACTTTCAATGGTAGTCAAGTGCTTGCCCGGATTCTTAGTTTGGAAAAG
Seq A exon
GTAATTTCAATCAGCTTTATATTAGGCTCATAATAAAAAGCAGGTAAACAAGCACCTCATAGGAAGAGTACTCCCATTTGGAGTAATATCTTAGAGAGATTCTTTTCTTAGGAGCTCTTTGATAAAAAGCTTAATTTAGAGACATTCTAAATTCCTTAAAGTCTTGGATATTTATTTACTTCCCTGTTAAGTCCCTTAATTGAACTTAAGATTTTCATTTGGTAAAAAAAAATAGGGTGGCATTATATGTGATCTTTTAATTTTCTGAAGCAGGGAAGAAAAAATGCTGTATGAAAGCAAATGAAGCTAGAGCAGCCATCAGACTTGCTGCCTCATCCATACTAAAAATGCTTTTGGAAAAATTGGAGCTATAAAAAATATCTCCCCAAAGTAATAAAATCCCTTTCCTTAGCATGGCTTAAAGAGCTTACCTATGGATTTCTGTCTGGTTTACTCACCTTCCTCTCTAAGATTCCAGATTGCAAAATGATAAACATAATTTCTAAGAGGTGTGTACTGGCAACCTATGAGCTACATGTGCACTTGTGCACATATACAAGGATTGTAAGAAACTGAATTTGAATGCCTTTAGGCCGAAGAGGTACCCTTCTGTTAACTGCAATCCCCACTTTTCCTTATGGTCTTTTATCCAACCAGATTCATACATTTAAGTTACTTGGCTGGCCCATGGACATTTGAGTCCTGCTTTGCATGCTCTTCAGAAATTAAGAGGAGATCACTTTCAACATTTTGCCACAGAGGGACTGTTTCTCTCTTAGTCTCTGTCTCTCTCTATCTCTCTGTCTCTCTCTCTCTCTCTCACACACACACACAAAAGAATTTTAATAATACATCTCCATCTTATCTAGTAGACATTTCTTCCATCTGAAACATGGAGACATAACTCTGATCTTTATTCATGTTATTCGTATTCCTGTGACCTTAACCACTGCTACTTAATATGTGTCTATTAGTTCCCCTTGAATTGACATTATGTATAACTGAGGCATCTTAATAAACTTATTTATGTCAGTAAACCAAAGAACAATTCAAAATGTATGGAAAAGGCACCATACCTACCAAGGCAATTCTGCCAGTGCTGGATGATATATAAGACCTTCACAGTCAGTTTAGTCTAGATTTTGAAATCCTGGTGTATATAATAGTTGAGGTACCTAAATCACCTTGTGTAACTGAGAAAACCCCACCATGTGCCCACTTAATTCCGGTATAAAGCCTCCACAAGTCATATCAGGGTGTAAACTAGGAAAAGTTATTTTATTCCATTCCATTTCTTCCATATTCTAATAATTTTATTTTATTTATGATTTTATTCCACTCCAATTCTTCTATATTCTAATACTGGAAGCAAACAGTCTTGTATTATATCAGTTAAATTCTTTAATAGCTAAAATAGCAATGCTATTCTCAAAAAAAAAAAAAAAAAAAAAACAACCCACAATGTATTGTATTGAAATTCCCAGGTTCTCTTTCTCAGATGGAATAAAATTTCAGAATTTTGTGAGGCAGCACAAAGTCATATATCCAGTGGAGATAAGTGAAAAATGAATTTTCTATGTATAGATACATATTTTCAGAGTAGTTGGAGCAGAGAAAGGATATAAAAATTAGAATGACATATTGATGTCTGTGTCAGCAATCTCTCTGATTCCTCTTTCTTTCTGTTTACTGCTTTCTGCAACCCTTGCAAGAATAAGTAGAGAAATCATTTTGGAGTGAATTTATATGTGACGTTAAGAAAGAGATATAGATGAATGACTAGAAGACCTGGCACTTAGAGTATATCCTAGAATAAATGGATCCTGTCTTATTTCATTATATTTAGAAGTTGAATCACTGGAAGGCATAGTGTAGATTTTGTGATATAAAAGGGGAAGGATGAAGGTAGTTAGCCTTCACCTGACAGGTTGTAAGAATCAATTATTAGGAAGGGTGCATTAAATATTGCAACTCACTGTAATTGGCTCTATAAATATCTAAACAACTTAATAATGGTGAATGTGATCAATATTATAACTGAAAATAGTGCTACATCTGTGACTAGTCTGTACTGTAAAATATATGGGGGCCCTCCATTATAAAAATGCTTTCCGATTATTGCCTTTGGTAATTATATACTTCTATGTATCTTCATATATGTGTTTTTCTTTTTTCTTTAATGCATAACTCATAAATGAAATTATTGCTTTTCCAATGAAACATAATCCATGTTTTTCTACTTCTTCTAAATAAACACTGTTGATCTTGAGACTAGACTCTGAAGCTCATCCTCTTTGGAAGTCTTCCAGAAATCCTGGCCAGTTTCCCATGAGGTGTCACAAATTGTTAGGACCCTTAAATCTCTGATGCTAAATGCCCAGGAAAAGCTAAGATTTTTAAGCCTGAAGATTTTTGTCAGAGAAGATCTAGTACATTAGGTTGTCTCATCAGATACAAGAAATGAGTGCAGTTAAGAAAATCATATGTGAATATTTTAAATCATAAAGATGACAATAATCACTATATTCACATATTCTCTCAGGGATTTTCATGGGTAAACCCAATGTATTTTAGTTTTAATTTCATAGTTGCTATAATGCAGGAACTTAAAATGGCTATTATGTAAACAGGTTCATTTCCTTGAAGACTAGTATATTTGATATCTGTATTTACTAACATTGTTATACCGCTTTTCTCACACACATTTTTAGCTTTTACAGCAAAATTCAACTTCAGAAGATATAAGAAGAGAACTGTGTGAGAACTATCCAGGTTATATTGCTGATTATGCCTTCTCTTGGACCACTCTAGGGAAAAATGTTCTTAATATATTTTGCCTGTCCAACAAGACCTTTTTAGAGTCTTCTCTCCAAGAACTAACAAACCAATTCTCTCAGGTGAGTGTAAACATTTTAATATGATCAGGGTCTCATAACAATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCACATTTGGCACGAATTCATCACACAGAGGTTCACATATGATGTCAAATTCTAAGCAATGACTACTTTCTATTTAAACGTGCTGGATTGAAATGATCCATTAAACAAAAAATATTGCTTTATGGTTAATATGGAGGTAGAGTCTCATCTTTGGAGATGAAATTTGACCTTGGTTTATGGTAAATGAAGATTGACTGTTTTCTCTGAGATTTTTAAGTAAGATTACTCAGGATGTAATGTAAGTTTAATAATTAAACTCTCAGAGCCTGGTAATTCGCAGAAGCTAGAATAATGGGTAATCTTTTAAATGTTTATTCTAAGATAAAACCTAATTTAAAACTTTGATTTTTATGAAAGAATATATCCCTCTTTCCAAAATATTATACACTAGAAACAAGAACTTTATTATATGAAGTGCTAATGACCTTTTTTATATGCTAGTCTTAAATTATGATGTGAAAATCAGGAAATAAGATACTGATCATCTTTTTAAAATGAAATTCCACATACAATGAGAGTTCACAAAATCAAAATTTTTGAGTTGCCTCAAAATTTTATAAATGAGAATAAATTCAACATGTTCACATCTAACATTTTTCCCCTTGATCCTATGAATTTTATTGAATGGATGGAGGTTTGTGACATTCCAGGAGGCGGTGATCAAGACCATCCCCAAGAGAAAGAAATGCAAAAAGGCAAAATGGTTGTCTGAGGAGGCCTTAAAAATAGCTGAGAAGAGAAGCTAAAGGCAAAGGAGAAAAGGAAAGATACAGCCATCTGAATGCAGAGTTCCAAAGGAGAGATAAAAAGTGAATAATACAAAGAAATAGAGGAAAGCAATAGAGTAGGAAAGACAAGAGGTCTCTTCAAGAAAATTAGAGTTACCAAGGGAACATATCATGGGCACAATAAAGGACAGAAATGCTATGGACCCAACAGAAGCAAAACTTATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTATACAAAAAAGATCTCCATGACCCAGATAACCACAATGTGTAATCACTCACCTAGAGCTAGACATGCTGGAATGCGAAGTCAAGAAGGCCTTAGAAAGCATCACTATGAGCAAAGCTAGTGGAGGTGATGGAATTCAAGTTGAGCTAGTTCAAATCCTAACAGATGATGCTGTGAAAGTACTACACTCAACATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGAGTGGAAAAGGTCAGTTTTCATTCCAATCATAAAGAAAGGCAATGTCGAAGAATACTCAAATTACCTCACAATTATACTCATCTCACATGCTAAATATTATTTTGAGCAAAATAATGCTCAAAATTCTCCAGGCAAAGCTTTAGCAGTACGTGAACTGGGAACTTACAGATGTTCAAGCTGAACTCAGAAAAGGCAGAAGAACCAGAGATCAAATTGCCTACATCCGTCGGATCATCGAAAAAGCAAGAGAGTTCCAGAAAAATTTCTGCTTCTACTTTATTGACTACACCAAAGCCTTTGACTAAGTGGGTCACAACAAACTGTGGAAAATTCTTCAGGAGATGGGAATACCAGACCACCTTATCTACCTCCTGAGATATCTGTATGCAGGTCAAGAAGCAACAGTTAGAACCAGACATGGAACAATGGACTGGTTCCAAATTCGGAAAGGAGCATGTCAGGGCTGTATTTTGTGAACTTGCTTATTTAACTTATAGGCAGAGTACATCATGGGAAATGCTGGGCTGGATGAAGCACAAGCTGGAATCAAGATTGCCAGGAGAAATATCAATAACCTCAGATATACAGATGATACCACCCTTATGGCAGAAAGGGAAGAACTAAAGAGCCTCTTGAAGAATATGAAGGAACACAGTGAAAAAGCTGGCTTAAAACTCAACATTCAAAAGATGAAGATCATGGCATCTGATCCCATCACTTCATCGCAAATAGATGGGGAAACAACGGAAACAGTGACAGACTATTTTTTTGGGTGCCAAAATCACTCCAGATGTTGACTGCAGCCATGAAATTAAAAGATGCTTGCTCATTGAAAGTAAAGCTATGACCAACCTAGACAGCATATTAAAAAGCAGAGACATAACTTTGCCGACAAAGGTCCATCTAGTCAAAGCTATGGTTTTTCAATTAGTCATGTATGGATGTGAGAGTTGGACCACAAAGAAAGCTGAGCTCTGAGGAATTCATGCTTTTGAACTGTGGTGTTGAAGAAGACTCTTGAGATTCCTCTGGACTGCAAGGAGATCAAACCAGTCTATCCTAAAGGAAATCATTCCTGACTATTTGTTGTAAGGAAATACTTTGGCCACCTGATATGAAGAACTGACTCACTAATACAGGAGGAGAAGGGGACGACAGAGGATGAGGTGGTTGGATGGCATCACTGACTTGATAGACATGAGTTTGAGCAAGCTCTGGGAGTTGGTGATACACAAGGAAGCCTGGCGAGCTGCAGTCCATTGGGTTGGAAAGAGTCAGACACGACTGAGCAACTGAACTGAACTGAACTGAAGTACAGAATGCTTAAATTACTCTTCATTAACCTGAGTTTTCCAAATGAACCAGATTAGAAGCACTGTTATGATAATGCCAATTCAATGTAGAGCACTTAGAATTCTATCTCAACAAACTCAGAAGCCATATAGAATGTGTGGCTAAGACTACCTTGTTCAAAATCACATTTTCAGCATGAAGGACCTTGAATTAAGATCCAACTAAAGCCTGACTATTAGTATGAATGAGCTTATTAAGAAAATTGCTTGGGGTGGGAATATAATGAAGAAAATACTTCTGAAGGTATTATCTGGGACCTGTGATCCAGAGCAAGAGTAAAGATCATGGTTTTCTTTTATTTGTTTGCTTAGAGTACAAGATGTGACTATAGGATATTCACTATAAATCATTATTATAACTAAAGTTCCTTGTATTGCAACAGAACTTTGGAAATATTTTGTTAAGTATGTGTAATTGTAATATTAAACATTTTCATGTATTTGTATATATATATATATTCACACATTTATACATAAAACACCTAAATTTTAAAGGTTTTCTATGCAAATAATATAAGGTCTACTAACGGATCTGCATGAGGAAATGGCAGCCCACTCCAGTATTCTTGTCTGGAGAATCCTATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCACAAAGAGTCAGACACAAGAGACTGAGCAGGCACTACTAATGGATATAGAGAGTATTTTTCTATATATCCTAAACTAGATCCTAGAGAAAAACAAACATATTACTCAGAAGCTAATTTTATTTTAAGAAATTAATTTTAATTTCCCAAAACCCAATTTAAAGTATTTTGTATAAATGGTTTTGTTAATGAAACATTAAATATGTCAACATCTAAAATTATAGGAAAAAATTCAATTACATGTAAGAACATTTGAAATGGTTATAGTTTTTCCAAGGATTGCTAAGTCACTTCAGTTGTGTCCGACTCTGTATGACCCCATAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAAGCAAGAACACTGGAGTGGGTTGCCATTTTCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCTGACTATTCGTGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATTGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATCGCCTTCTCCAAAGTATAGGATTACTTCAAACTAAATGAAAATCTGAATTACTTAACTGAAACTCTCGACTTTCAGTGTTTTCAAAGACAGTCAGCCATGTGGTTACAGATATTGAAGTCTCATCTCACCCTGTCTGTGGTTTTATTTTTTTAAG
Seq C2 exon
CTATCACGTGATCCAAACAACCAGAAGACAATGTTTCAGGAAATGGTTAAAGTACTATCCTTTTTCTCACAAGTACAAGAGCAGACAGCTGTGTGGGAGCTTCTCTCCAGTTTTCCAAATGTGTTCCAGAATGACAGCACACTAAGCAATCTATTTGATGCGCTTCGAAATGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003472:ENSBTAT00000004518:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]